added dev packages

atlas_server/src/static/training/predict.job.sh

@@ -10,6 +10,11 @@ export ATLAS_MODULE=atlas/v1.2.4-amd64
 module load ${ATLAS_MODULE}
 echo Modules loaded
 
+# Include dev modules
+ATLASUI_CODE_DIR=/p/data1/bigbrains/personal/schiffer1/atlasui/code
+export APPTAINER_BIND=${ATLASUI_CODE_DIR}/atlas/atlas:/usr/local/lib/python3.10/dist-packages/atlas,${ATLASUI_CODE_DIR}/atlaslib/atlaslib:/usr/local/lib/python3.10/dist-packages/atlaslib,${APPTAINER_BIND}
+echo "Including atlas dev packages: ${APPTAINER_BIND}"
+
 export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 # Environment variables

atlas_server/src/static/training/train.job.sh

@@ -10,6 +10,11 @@ export ATLAS_MODULE=atlas/v1.2.4-amd64
 module load ${ATLAS_MODULE}
 echo Modules loaded
 
+# Include dev modules
+ATLASUI_CODE_DIR=/p/data1/bigbrains/personal/schiffer1/atlasui/code
+export APPTAINER_BIND=${ATLASUI_CODE_DIR}/atlas/atlas:/usr/local/lib/python3.10/dist-packages/atlas,${ATLASUI_CODE_DIR}/atlaslib/atlaslib:/usr/local/lib/python3.10/dist-packages/atlaslib,${APPTAINER_BIND}
+echo "Including atlas dev packages: ${APPTAINER_BIND}"
+
 export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 # Environment variables

atlas_server/src/static/training/train_predict.job.sh

@@ -10,6 +10,11 @@ export ATLAS_MODULE=atlas/v1.2.4-amd64
 module load ${ATLAS_MODULE}
 echo Modules loaded
 
+# Include dev modules
+ATLASUI_CODE_DIR=/p/data1/bigbrains/personal/schiffer1/atlasui/code
+export APPTAINER_BIND=${ATLASUI_CODE_DIR}/atlas/atlas:/usr/local/lib/python3.10/dist-packages/atlas,${ATLASUI_CODE_DIR}/atlaslib/atlaslib:/usr/local/lib/python3.10/dist-packages/atlaslib,${APPTAINER_BIND}
+echo "Including atlas dev packages: ${APPTAINER_BIND}"
+
 export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 # Environment variables