fix annotation pattern

atlas_server/src/static/training/predict.job.sh

@@ -20,7 +20,7 @@ export OUTPUT_SPACING=16
 
 # Set annotation directory (assume we are in the experiment folder)
 export ATLAS_ANNOTATION_DIR=$(pwd)/annotations/
-export ATLAS_ANNOTATION_FILE="B${BRAIN}_{slice:04d}_annotations.hdf5"
+export ATLAS_ANNOTATION_FILE="B{brain:02d}_{slice:04d}_annotations.hdf5"
 
 # Make prediction and run evaluation
 srun --cpus-per-task 4 atlas dl predict $(pwd) --verbose --output-spacing ${OUTPUT_SPACING} --overwrite --save-argmax

atlas_server/src/static/training/train.job.sh

@@ -19,7 +19,7 @@ export SCRATCH_USER=/p/scratch/cjinm16/schiffer1/
 
 # Set annotation directory (assume we are in the experiment folder)
 export ATLAS_ANNOTATION_DIR=$(pwd)/annotations/
-export ATLAS_ANNOTATION_FILE="B${BRAIN}_{slice:04d}_annotations.hdf5"
+export ATLAS_ANNOTATION_FILE="B{brain:02d}_{slice:04d}_annotations.hdf5"
 
 # Some more variables
 INPUT_SPACING=1

atlas_server/src/static/training/train_predict.job.sh

@@ -19,7 +19,7 @@ export SCRATCH_USER=/p/scratch/cjinm16/schiffer1/
 
 # Set annotation directory (assume we are in the experiment folder)
 export ATLAS_ANNOTATION_DIR=$(pwd)/annotations/
-export ATLAS_ANNOTATION_FILE="B${BRAIN}_{slice:04d}_annotations.hdf5"
+export ATLAS_ANNOTATION_FILE="B{brain:02d}_{slice:04d}_annotations.hdf5"
 
 # Some more variables
 INPUT_SPACING=1