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Commit 21fcd49d authored by s.islam's avatar s.islam
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Running Code: First Version with JSC data path

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code/data.py
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...@@ -122,12 +122,12 @@ class TestDataModule(pl.LightningDataModule): ...@@ -122,12 +122,12 @@ class TestDataModule(pl.LightningDataModule):
# Load the pyramid/00 per file # Load the pyramid/00 per file
#For JSC Training. #For JSC Training.
#pli_path = '/p/fastdata/pli/Private/oberstrass1/datasets/vervet1818/vervet1818-stained/data/aligned/pli/NTransmittance' pli_path = '/p/fastdata/pli/Private/oberstrass1/datasets/vervet1818/vervet1818-stained/data/aligned/pli/NTransmittance'
#cyto_path = '/p/fastdata/pli/Private/oberstrass1/datasets/vervet1818/vervet1818-stained/data/aligned/stained' cyto_path = '/p/fastdata/pli/Private/oberstrass1/datasets/vervet1818/vervet1818-stained/data/aligned/stained'
#For Local Machine Training. #For Local Machine Training.
pli_path = '/media/tushar/A2246889246861F1/Master Thesis MAIA/example-data/pli/NTransmittance' #pli_path = '/media/tushar/A2246889246861F1/Master Thesis MAIA/example-data/pli/NTransmittance'
cyto_path = '/media/tushar/A2246889246861F1/Master Thesis MAIA/example-data/stained' #cyto_path = '/media/tushar/A2246889246861F1/Master Thesis MAIA/example-data/stained'
pli_files_list = [file for file in os.listdir(pli_path) if pli_files_list = [file for file in os.listdir(pli_path) if
file.endswith(('.h5', '.hdf', '.h4', '.hdf4', '.he2', '.hdf5', '.he5'))] file.endswith(('.h5', '.hdf', '.h4', '.hdf4', '.he2', '.hdf5', '.he5'))]
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