Add functional tests for 180 degree rotated cylinder in substrate and fix

Core/Multilayer/MultiLayer.cpp

Core/StandardSamples/CylindersBuilder.cpp

Core/StandardSamples/CylindersBuilder.h

Core/StandardSamples/SampleBuilderFactory.cpp

Tests/Functional/Core/CMakeLists.txt

Tests/Functional/GUI/GUIStandardTest/CMakeLists.txt

Tests/Functional/PyCore/export/CMakeLists.txt

.../Functional/TestMachinery/StandardSimulationsRegistry.cpp

Tests/ReferenceData/StandardSuite/RotatedCylinder.int.gz

auto/Wrap/libBornAgainFit_wrap.cpp