Creation of Xcode Fit library target + fixing small Xcode issues

Core/Fitting/inc/FitSuitePrintObserver.h

@@ -20,7 +20,6 @@ public:
 
 private:
     int m_print_every_nth;
-    double m_wall_time;
     clock_t m_last_call_clock;
     timeval m_last_call_time;
 };

Core/Fitting/inc/MinimizerScan.h

@@ -25,7 +25,7 @@
 class MinimizerScan : public IMinimizer
 {
  public:
-    MinimizerScan(int nbins = 10) : m_fcnvalues_map(0), m_nbins(nbins), m_ncall(0) { }
+    MinimizerScan(int nbins = 10) : m_fcnvalues_map(0), m_nbins(nbins) { }
     virtual ~MinimizerScan() { delete m_fcnvalues_map; }
 
     virtual void minimize();
@@ -61,8 +61,6 @@ class MinimizerScan : public IMinimizer
     size_t m_nbins; //! number of bins per one parameter
     FitSuiteParameters m_parameters; //! minimizer parameters
     function_chi2_t m_fcn;
-
-    size_t m_ncall;
 };
 
 #endif // MINIMIZERSCAN_H

Core/Fitting/src/FitSuitePrintObserver.cpp

@@ -4,7 +4,6 @@
 
 FitSuitePrintObserver::FitSuitePrintObserver(int print_every_nth)
     : m_print_every_nth(print_every_nth)
-    , m_wall_time(0.0)
     , m_last_call_clock(clock())
     , m_last_call_time()
 {

Core/Fitting/src/IFitSuiteStrategy.cpp

@@ -134,6 +134,7 @@ void FitSuiteStrategyAdjustParameters::execute()
 //! Helps minimizer get out of local minima by disturbing real data
 void FitSuiteStrategyBootstrap::execute()
 {
+    (void)m_n_iterations;
     throw NotImplementedException("FitSuiteStrategyBootstrap::execute()");
 
 //    if( !m_fit_suite ) throw NullPointerException("FitSuiteStrategyBootsrap::execute() -> FitSuite doesn't exists");

Core/Samples/inc/InterferenceFunction2DLattice.h

@@ -65,7 +65,6 @@ class InterferenceFunction2DLattice : public IInterferenceFunction
 
     double m_asx, m_asy; //!< x,y coordinates of a*
     double m_bsx, m_bsy; //!< x,y coordinates of b*
-    int m_n_a, m_n_b; //!< limits for reciprocal lattice sum
     double m_prefactor; //!< fixed prefactor for normalization
     int m_na, m_nb; //!< determines the number of reciprocal lattice points to use
 };

Core/Samples/src/IMaterial.cpp

-// ************************************************************************** //
-//
-//  BornAgain: simulate and fit scattering at grazing incidence
-//
-//! @file      Samples/src/IMaterial.cpp
-//! @brief     Implements class IMaterial.
-//!
-//! @homepage  http://apps.jcns.fz-juelich.de/BornAgain
-//! @license   GNU General Public License v3 or higher (see COPYING)
-//! @copyright Forschungszentrum Jülich GmbH 2013
-//! @authors   Scientific Computing Group at MLZ Garching
-//! @authors   C. Durniak, G. Pospelov, W. Van Herck, J. Wuttke
-//
-// ************************************************************************** //
-
-#include "IMaterial.h"
-
-//! TODO: try without
-IMaterial& IMaterial::operator=(const IMaterial& other)
-{
-}
-
-

Core/Tools/src/fp_exception_glibc_extension.c

@@ -167,8 +167,8 @@ feenableexcept (unsigned int excepts)
   old_excepts = fenv.__control&  FE_ALL_EXCEPT;
 
   // unmask
-  fenv.__control& = ~new_excepts;
-  fenv.__mxcsr  & = ~(new_excepts << 7);
+  fenv.__control &= ~new_excepts;
+  fenv.__mxcsr   &= ~(new_excepts << 7);
 
   return ( fesetenv (&fenv) ? -1 : old_excepts );
 }

XCode_BornAgain.xcodeproj/project.pbxproj

@@ -11,7 +11,6 @@
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-		621D0BCF16A9850000134391 /* ROOTGSLNLSMinimizer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 621D0BCB16A9850000134391 /* ROOTGSLNLSMinimizer.cpp */; };
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@@ -55,7 +54,6 @@
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 		6222484E160CB853008205AC /* ICompositeSample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 622222DE160CB745008205AC /* ICompositeSample.cpp */; };
-		6222484F160CB853008205AC /* IMaterial.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 622222DF160CB745008205AC /* IMaterial.cpp */; };
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@@ -85,7 +83,6 @@
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@@ -163,18 +160,12 @@
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@@ -192,6 +183,59 @@
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@@ -228,7 +272,6 @@
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@@ -256,6 +299,20 @@
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 			remoteInfo = GISASFW.Core;
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@@ -68829,10 +68965,114 @@
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 				627C2FCB160B50D6004C1B11 /* GISASFW.TestCore */,
 				6222D090160C8E59008205AC /* GISASFW.CL.All */,
+				62B3173917131B55004A9D02 /* libBornAgain.Fit.dylib */,
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 		};
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+				62B3163817130E4F004A9D02 /* Factory */,
+				62B3164617130E50004A9D02 /* Fit.pro */,
+				62B3164717130E50004A9D02 /* Makefile */,
+				62B3164817130E50004A9D02 /* PythonAPI */,
+				62B3166C17130E50004A9D02 /* libBornAgainFit.so */,
+				62B3166D17130E50004A9D02 /* python_module.pri */,
+			);
+			path = Fit;
+			sourceTree = "<group>";
+		};
+		62B3163817130E4F004A9D02 /* Factory */ = {
+			isa = PBXGroup;
+			children = (
+				62B3163917130E4F004A9D02 /* inc */,
+				62B3164017130E50004A9D02 /* src */,
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+				62B3163C17130E4F004A9D02 /* ROOTGSLSimAnMinimizer.h */,
+				62B3163D17130E4F004A9D02 /* ROOTMinimizer.h */,
+				62B3163E17130E4F004A9D02 /* ROOTMinimizerFunction.h */,
+				62B3163F17130E50004A9D02 /* ROOTMinimizerHelper.h */,
+			);
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+				62B3164117130E50004A9D02 /* MinimizerFactory.cpp */,
+				62B3164217130E50004A9D02 /* ROOTGSLNLSMinimizer.cpp */,
+				62B3164317130E50004A9D02 /* ROOTGSLSimAnMinimizer.cpp */,
+				62B3164417130E50004A9D02 /* ROOTMinimizer.cpp */,
+				62B3164517130E50004A9D02 /* ROOTMinimizerHelper.cpp */,
+			);
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+				62B3164917130E50004A9D02 /* inc */,
+				62B3165B17130E50004A9D02 /* src */,
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+				62B3165317130E50004A9D02 /* OutputDataNormalizer.pypp.h */,
+				62B3165417130E50004A9D02 /* OutputDataSimpleNormalizer.pypp.h */,
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+				62B3165617130E50004A9D02 /* PythonFitList.h */,
+				62B3165717130E50004A9D02 /* SquaredFunctionDefault.pypp.h */,
+				62B3165817130E50004A9D02 /* SquaredFunctionWhichOnlyWorks.pypp.h */,
+				62B3165917130E50004A9D02 /* SquaredFunctionWithGaussianError.pypp.h */,
+				62B3165A17130E50004A9D02 /* SquaredFunctionWithSystematicError.pypp.h */,
+			);
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+				62B3165C17130E50004A9D02 /* AttLimits.pypp.cpp */,
+				62B3165D17130E50004A9D02 /* ChiSquaredModule.pypp.cpp */,
+				62B3165E17130E50004A9D02 /* FitSuite.pypp.cpp */,
+				62B3165F17130E50004A9D02 /* FitSuiteParameters.pypp.cpp */,
+				62B3166017130E50004A9D02 /* IChiSquaredModule.pypp.cpp */,
+				62B3166117130E50004A9D02 /* IMinimizer.pypp.cpp */,
+				62B3166217130E50004A9D02 /* IOutputDataNormalizer.pypp.cpp */,
+				62B3166317130E50004A9D02 /* ISquaredFunction.pypp.cpp */,
+				62B3166417130E50004A9D02 /* MinimizerFactory.pypp.cpp */,
+				62B3166517130E50004A9D02 /* OutputDataNormalizer.pypp.cpp */,
+				62B3166617130E50004A9D02 /* OutputDataSimpleNormalizer.pypp.cpp */,
+				62B3166717130E50004A9D02 /* PythonModule.cpp */,
+				62B3166817130E50004A9D02 /* SquaredFunctionDefault.pypp.cpp */,
+				62B3166917130E50004A9D02 /* SquaredFunctionWhichOnlyWorks.pypp.cpp */,
+				62B3166A17130E50004A9D02 /* SquaredFunctionWithGaussianError.pypp.cpp */,
+				62B3166B17130E50004A9D02 /* SquaredFunctionWithSystematicError.pypp.cpp */,
+			);
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 		62EA210816B92C7500184E9A /* Tests */ = {
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@@ -68896,12 +69136,14 @@
 		62EA211716B92C7600184E9A /* TestCore */ = {
 			isa = PBXGroup;
 			children = (
+				62B3161A171302C9004A9D02 /* CVectorTest.h */,
+				62B3161B171302C9004A9D02 /* InstrumentTest.h */,
+				62B3161C171302C9004A9D02 /* KVectorTest.h */,
+				62B3161D171302C9004A9D02 /* SimulationTest.h */,
 				62EA211816B92C7600184E9A /* AxisDoubleTest.h */,
 				62EA211916B92C7600184E9A /* BeamTest.h */,
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-				62EA211C16B92C7600184E9A /* ExperimentTest.h */,
-				62EA211D16B92C7600184E9A /* GISASExperimentTest.h */,
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 				62EA212016B92C7600184E9A /* MaskTest.h */,
@@ -68956,6 +69198,7 @@
 			buildRules = (
 			);
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 			productReference = 627C2FCB160B50D6004C1B11 /* GISASFW.TestCore */;
 			productType = "com.apple.product-type.tool";
 		};
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+			buildConfigurationList = 62B3173617131B55004A9D02 /* Build configuration list for PBXNativeTarget "BornAgain.Fit" */;
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+				62B3172717131B55004A9D02 /* Frameworks */,
+				62B3173417131B55004A9D02 /* CopyFiles */,
+			);
+			buildRules = (
+			);
+			dependencies = (
+				62B3174017131B75004A9D02 /* PBXTargetDependency */,
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+			productName = GISASFW.Core;
+			productReference = 62B3173917131B55004A9D02 /* libBornAgain.Fit.dylib */;
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 /* End PBXNativeTarget section */
 /* Begin PBXProject section */
 		627C2C5A160B4937004C1B11 /* Project object */ = {
 			isa = PBXProject;
 			attributes = {
-				LastUpgradeCheck = 0440;
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 			};
 			buildConfigurationList = 627C2C5D160B4937004C1B11 /* Build configuration list for PBXProject "XCode_BornAgain" */;
 			compatibilityVersion = "Xcode 3.2";
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 				627C2FCA160B50D6004C1B11 /* BornAgain.TestCore */,
 				6222D08F160C8E59008205AC /* BornAgain.CL.All */,
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 			shellPath = /bin/sh;
-			shellScript = "cd ${SRCROOT}/Core\nqmake\nmake\ncd ${SRCROOT}/App\nqmake\nmake";
+			shellScript = "PATH=/opt/local/bin:${PATH}\ncd ${SRCROOT}/Core\nqmake\nmake\ncd ${SRCROOT}/Fit\nqmake\nmake\ncd ${SRCROOT}/App\nqmake\nmake";
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+				62B316AA17131A25004A9D02 /* IsGISAXS02.cpp in Sources */,
+				62B316AB17131A25004A9D02 /* IsGISAXS03.cpp in Sources */,
+				62B316AC17131A25004A9D02 /* IsGISAXS04.cpp in Sources */,
+				62B316AD17131A25004A9D02 /* IsGISAXS06.cpp in Sources */,
+				62B316AE17131A25004A9D02 /* IsGISAXS07.cpp in Sources */,
+				62B316AF17131A25004A9D02 /* IsGISAXS08.cpp in Sources */,
+				62B316B017131A25004A9D02 /* IsGISAXS09.cpp in Sources */,
+				62B316B117131A25004A9D02 /* IsGISAXS10.cpp in Sources */,
+				62B316B217131A25004A9D02 /* IsGISAXS11.cpp in Sources */,
+				62B316B317131A25004A9D02 /* IsGISAXS15.cpp in Sources */,
+				62B316B417131A25004A9D02 /* MesoCrystal1.cpp in Sources */,
+				62B316B517131A25004A9D02 /* SampleBuilder.cpp in Sources */,
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-				6222488E160CC1E6008205AC /* CommandLine.cpp in Sources */,
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-				625A173716BAAE3B004943DB /* ROOTGSLSimAnMinimizer.cpp in Sources */,
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 				625A173A16BAAE3B004943DB /* TestIsGISAXS14.cpp in Sources */,
 				6236DD1016CE9F1800ECED4F /* TestToySimulation.cpp in Sources */,
+				62B316A717131665004A9D02 /* FitSuiteDrawObserver.cpp in Sources */,
+				62B316A817131665004A9D02 /* FitSuiteWriteTreeObserver.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
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@@ -69157,7 +69425,6 @@
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-				6222484F160CB853008205AC /* IMaterial.cpp in Sources */,
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 				62224852160CB853008205AC /* InterferenceFunction1DParaCrystal.cpp in Sources */,
 				62224853160CB853008205AC /* Lattice.cpp in Sources */,
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 				62B316131712FE29004A9D02 /* fp_exception_glibc_extension.c in Sources */,
 				62B316141712FE29004A9D02 /* MessageService.cpp in Sources */,
+				62B3161917130081004A9D02 /* FitSuitePrintObserver.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
@@ -69242,7 +69510,6 @@
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 				62EA212C16B92D7500184E9A /* main.cpp in Sources */,
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@@ -69258,6 +69525,18 @@
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
+		62B316B917131B55004A9D02 /* Sources */ = {
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+			buildActionMask = 2147483647;
+			files = (
+				62B3173A17131B6F004A9D02 /* MinimizerFactory.cpp in Sources */,
+				62B3173B17131B6F004A9D02 /* ROOTGSLNLSMinimizer.cpp in Sources */,
+				62B3173C17131B6F004A9D02 /* ROOTGSLSimAnMinimizer.cpp in Sources */,
+				62B3173D17131B6F004A9D02 /* ROOTMinimizer.cpp in Sources */,
+				62B3173E17131B6F004A9D02 /* ROOTMinimizerHelper.cpp in Sources */,
+			);
+			runOnlyForDeploymentPostprocessing = 0;
+		};
 /* End PBXSourcesBuildPhase section */
 /* Begin PBXTargetDependency section */
@@ -69271,6 +69550,16 @@
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 			targetProxy = 627C2FE4160B5900004C1B11 /* PBXContainerItemProxy */;
 		};
+		62B3174017131B75004A9D02 /* PBXTargetDependency */ = {
+			isa = PBXTargetDependency;
+			target = 627C2F06160B4F98004C1B11 /* BornAgain.Core */;
+			targetProxy = 62B3173F17131B75004A9D02 /* PBXContainerItemProxy */;
+		};
+		62B3175617131E36004A9D02 /* PBXTargetDependency */ = {
+			isa = PBXTargetDependency;
+			target = 62B316B817131B55004A9D02 /* BornAgain.Fit */;
+			targetProxy = 62B3175517131E36004A9D02 /* PBXContainerItemProxy */;
+		};
 /* End PBXTargetDependency section */
 /* Begin XCBuildConfiguration section */
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 				GCC_OPTIMIZATION_LEVEL = 0;
-				GCC_PREPROCESSOR_DEFINITIONS = (
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-					"$(inherited)",
-				);
 				GCC_SYMBOLS_PRIVATE_EXTERN = NO;
 				GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
 				GCC_WARN_ABOUT_RETURN_TYPE = YES;
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 				GCC_DYNAMIC_NO_PIC = NO;
 				GCC_ENABLE_OBJC_EXCEPTIONS = YES;
 				GCC_OPTIMIZATION_LEVEL = 0;
-				GCC_PREPROCESSOR_DEFINITIONS = (
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-					"$(inherited)",
-				);
 				GCC_SYMBOLS_PRIVATE_EXTERN = NO;
 				GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
 				GCC_WARN_ABOUT_RETURN_TYPE = YES;
@@ -69580,6 +69861,91 @@
 			};
 			name = Release;
 		};
+		62B3173717131B55004A9D02 /* Debug */ = {
+			isa = XCBuildConfiguration;
+			buildSettings = {
+				ALWAYS_SEARCH_USER_PATHS = NO;
+				ARCHS = "$(ARCHS_STANDARD_64_BIT)";
+				CLANG_CXX_LANGUAGE_STANDARD = "gnu++0x";
+				CLANG_WARN__DUPLICATE_METHOD_MATCH = YES;
+				COMBINE_HIDPI_IMAGES = YES;
+				COPY_PHASE_STRIP = NO;
+				EXECUTABLE_PREFIX = lib;
+				GCC_C_LANGUAGE_STANDARD = gnu99;
+				GCC_DYNAMIC_NO_PIC = NO;
+				GCC_ENABLE_OBJC_EXCEPTIONS = YES;
+				GCC_OPTIMIZATION_LEVEL = 0;
+				GCC_SYMBOLS_PRIVATE_EXTERN = NO;
+				GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
+				GCC_WARN_ABOUT_RETURN_TYPE = YES;
+				GCC_WARN_UNINITIALIZED_AUTOS = YES;
+				GCC_WARN_UNUSED_VARIABLE = YES;
+				HEADER_SEARCH_PATHS = (
+					/opt/local/include,
+					/opt/local/include/root,
+					/opt/local/include/boost,
+					"${PYTHON_INCLUDE}",
+					"${PYTHON_NUMPY_INCLUDE}",
+				);
+				LIBRARY_SEARCH_PATHS = (
+					"$(inherited)",
+					/opt/local/lib,
+					"${PYTHON_LIB}",
+					/opt/local/Library/Frameworks/Python.framework/Versions/2.7,
+					/opt/local/lib/root,
+				);
+				ONLY_ACTIVE_ARCH = YES;
+				PRIVATE_HEADERS_FOLDER_PATH = "";
+				PRODUCT_NAME = BornAgain.Fit;
+				PUBLIC_HEADERS_FOLDER_PATH = "";
+				PYTHON_INCLUDE = /opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7;
+				PYTHON_LIB = /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib;
+				PYTHON_NUMPY_INCLUDE = "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include";
+				SDKROOT = macosx;
+			};
+			name = Debug;
+		};
+		62B3173817131B55004A9D02 /* Release */ = {
+			isa = XCBuildConfiguration;
+			buildSettings = {
+				ALWAYS_SEARCH_USER_PATHS = NO;
+				ARCHS = "$(ARCHS_STANDARD_64_BIT)";
+				CLANG_CXX_LANGUAGE_STANDARD = "gnu++0x";
+				CLANG_WARN__DUPLICATE_METHOD_MATCH = YES;
+				COMBINE_HIDPI_IMAGES = YES;
+				COPY_PHASE_STRIP = YES;
+				DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
+				EXECUTABLE_PREFIX = lib;
+				GCC_C_LANGUAGE_STANDARD = gnu99;
+				GCC_ENABLE_OBJC_EXCEPTIONS = YES;
+				GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
+				GCC_WARN_ABOUT_RETURN_TYPE = YES;
+				GCC_WARN_UNINITIALIZED_AUTOS = YES;
+				GCC_WARN_UNUSED_VARIABLE = YES;
+				HEADER_SEARCH_PATHS = (
+					/opt/local/include,
+					/opt/local/include/root,
+					/opt/local/include/boost,
+					"${PYTHON_INCLUDE}",
+					"${PYTHON_NUMPY_INCLUDE}",
+				);
+				LIBRARY_SEARCH_PATHS = (
+					"$(inherited)",
+					/opt/local/lib,
+					"${PYTHON_LIB}",
+					/opt/local/Library/Frameworks/Python.framework/Versions/2.7,
+					/opt/local/lib/root,
+				);
+				PRIVATE_HEADERS_FOLDER_PATH = "";
+				PRODUCT_NAME = BornAgain.Fit;
+				PUBLIC_HEADERS_FOLDER_PATH = "";
+				PYTHON_INCLUDE = /opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7;
+				PYTHON_LIB = /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib;
+				PYTHON_NUMPY_INCLUDE = "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include";
+				SDKROOT = macosx;
+			};
+			name = Release;
+		};
 /* End XCBuildConfiguration section */
 /* Begin XCConfigurationList section */
@@ -69628,6 +69994,15 @@
 			defaultConfigurationIsVisible = 0;
 			defaultConfigurationName = Release;
 		};
+		62B3173617131B55004A9D02 /* Build configuration list for PBXNativeTarget "BornAgain.Fit" */ = {
+			isa = XCConfigurationList;
+			buildConfigurations = (
+				62B3173717131B55004A9D02 /* Debug */,
+				62B3173817131B55004A9D02 /* Release */,
+			);
+			defaultConfigurationIsVisible = 0;
+			defaultConfigurationName = Release;
+		};
 /* End XCConfigurationList section */
 	};
 	rootObject = 627C2C5A160B4937004C1B11 /* Project object */;