Renamed annotation files

atlas_server/src/scheduler.py

@@ -83,7 +83,7 @@ def submit_training_job(brain, annotations, job_configuration, project_id, task_
             "Regions": regions_list,
             "section": section,
         }
-        annotation_fname = f"annotations/B{brain:02d}_annotation_{section:04d}.json"
+        annotation_fname = f"annotations/B{brain:02d}_{section:04d}_annotations.json"
         annotation_content = json.dumps(annotation_json, indent=4)
         annotation_content = base64.b64encode(annotation_content.encode("utf-8")).decode("ascii")
         additional_files.append({

atlas_server/src/static/training/train.job.sh

@@ -16,7 +16,7 @@ export SCRATCH_USER=/p/scratch/cjinm16/schiffer1/
 
 # Set annotation directory (assume we are in the experiment folder)
 export ATLAS_ANNOTATION_DIR=`pwd`/annotations/
-export ATLAS_ANNOTATION_FILE="B${BRAIN}_annotation_{slice:04d}.hdf5"
+export ATLAS_ANNOTATION_FILE="B${BRAIN}_{slice:04d}_annotations.hdf5"
 
 # Some more variables
 INPUT_SPACING=1