Rname CLI clone functionality

README.md

@@ -152,3 +152,11 @@ You can use this file to load the remote repositories based on the cache.json wi
 ```bash
 cadet-rdm fill-data-from-cadet-rdm-json
 ```
+
+### Cloning from remote
+
+You should use `cadet-rdm clone` instead of `git clone` to clone the repo to a new location.
+
+```bash
+cadet-rdm clone <URL> <path/to/repo>
+```

cadetrdm/__init__.py

 from .repositories import ProjectRepo
-from .initialize_repo import initialize_repo, initialize_from_remote
+from .initialize_repo import initialize_repo, clone
 from .conda_env_utils import prepare_conda_env
 
 __version__ = "0.0.6"

cadetrdm/cli_integration.py

@@ -5,7 +5,7 @@ import click
 
 from .repositories import ProjectRepo, BaseRepo
 from .initialize_repo import initialize_repo as initialize_git_repo_implementation, init_lfs
-from .initialize_repo import initialize_from_remote as initialize_from_remote_implementation
+from .initialize_repo import clone as clone_implementation
 from .conda_env_utils import prepare_conda_env as prepare_conda_env_implementation
 
 CONTEXT_SETTINGS = dict(help_option_names=['-h', '--help'])
@@ -20,8 +20,8 @@ def cli():
 @click.option('--path_to_repo', default=None,
               help='Path to folder for the repository. Optional.')
 @click.argument('project_url')
-def initialize_from_remote(project_url, path_to_repo: str = None):
-    initialize_from_remote_implementation(project_url, path_to_repo)
+def clone(project_url, path_to_repo: str = None):
+    clone_implementation(project_url, path_to_repo)
 
 
 @cli.command()

cadetrdm/initialize_repo.py

@@ -168,7 +168,7 @@ def create_output_readme():
     write_lines_to_file("README.md", readme_lines, open_type="a")
 
 
-def initialize_from_remote(project_url, path_to_repo: str = None):
+def clone(project_url, path_to_repo: str = None):
     if path_to_repo is None:
         path_to_repo = project_url.split("/")[-1]
     print(f"Cloning {project_url} into {path_to_repo}")
@@ -192,5 +192,8 @@ def initialize_from_remote(project_url, path_to_repo: str = None):
             break
     environment_path = os.path.join(os.getcwd(), path_to_repo, "environment.yml")
 
+    repo = ProjectRepo(path_to_repo)
+    repo.fill_data_from_cadet_rdm_json()
+
     print("To set up the project conda environment please run this command:\n"
           f"conda deactivate && conda env create -f '{environment_path}'")

tests/test_git_adapter.py

@@ -7,7 +7,7 @@ import pytest
 import git
 import numpy as np
 
-from cadetrdm import initialize_repo, ProjectRepo, initialize_from_remote
+from cadetrdm import initialize_repo, ProjectRepo, clone
 from cadetrdm.initialize_repo import init_lfs
 from cadetrdm.repositories import OutputRepo, BaseRepo
 from cadetrdm.io_utils import delete_path
@@ -134,7 +134,7 @@ def try_add_remote(path_to_repo):
 def try_initialize_from_remote():
     if os.path.exists("test_repo_from_remote"):
         delete_path("test_repo_from_remote")
-    initialize_from_remote("https://jugit.fz-juelich.de/IBG-1/ModSim/cadet/rdm-examples-fraunhofer-ime-aachen",
+    clone("https://jugit.fz-juelich.de/IBG-1/ModSim/cadet/rdm-examples-fraunhofer-ime-aachen",
                            "test_repo_from_remote")
     assert try_init_gitpython_repo("test_repo_from_remote")