Add "conda deactivate" to prepared conda commands

cadetrdm/conda_env_utils.py

@@ -13,5 +13,5 @@ def prepare_conda_env(url: str = None):
             shutil.copyfileobj(response, tmp_file)
 
     print("Please now run this command in a terminal (Linux) or anaconda shell (Windows):\n")
-    print(f"conda env create -f {tmp_file.name}\n")
+    print(f"conda deactivate && conda env create -f {tmp_file.name}\n")
     return

cadetrdm/initialize_repo.py

@@ -183,4 +183,4 @@ def initialize_from_remote(project_url, path_to_repo: str = None):
     environment_path = os.path.join(os.getcwd(), path_to_repo, "environment.yml")
 
     print("To set up the project conda environment please run this command:\n"
-          f"conda env create -f '{environment_path}'")
+          f"conda deactivate && conda env create -f '{environment_path}'")