Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
siibra-configurations
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Dickscheid, Timo
siibra-configurations
Commits
74da4edb
Commit
74da4edb
authored
2 years ago
by
Dickscheid, Timo
Browse files
Options
Downloads
Patches
Plain Diff
update volume of interest spec for siibra v0.4a13
parent
f0c5039f
No related branches found
No related tags found
No related merge requests found
Pipeline
#82922
failed
2 years ago
Stage: test
Stage: git-robot
Changes
1
Pipelines
2
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
features/volumes/pli_hippocampus.json
+4
-31
4 additions, 31 deletions
features/volumes/pli_hippocampus.json
with
4 additions
and
31 deletions
features/volumes/pli_hippocampus.json
+
4
−
31
View file @
74da4edb
{
"@type"
:
"siibra/feature/voi/v0.0.1"
,
"@type"
:
"siibra/feature/voi/v0.1"
,
"modality"
:
"3D Polarized light imaging (3D-PLI)"
,
"name"
:
"Fiber structures of a human hippocampus based on joint DMRI, 3D-PLI, and TPFM acquisitions"
,
"ebrains"
:
{
"minds/core/dataset/v1.0.0"
:
"b08a7dbc-7c75-4ce7-905b-690b2b1e8957"
...
...
@@ -7,64 +8,36 @@
"space"
:
{
"@id"
:
"minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588"
},
"volume
Src
"
:
[
"volume
s
"
:
[
{
"name"
:
"PLI HSV-encoded fiber orientation map"
,
"@type"
:
"siibra/volume/v0.0.1"
,
"urls"
:
{
"neuroglancer/precomputed"
:
"https://neuroglancer.humanbrainproject.eu/precomputed/data-repo/HSV-FOM"
},
"detail"
:
{
"neuroglancer/precomputed"
:
{
"shader"
:
"void main(){ float r = toNormalized(getDataValue(0)); float g = toNormalized(getDataValue(1)); float b = toNormalized(getDataValue(2)); if (r < 0.1) emitTransparent(); else emitRGB(vec3(r, g, b)); }"
,
"opacity"
:
1
}
}
},
{
"@type"
:
"siibra/volume/v0.0.1"
,
"urls"
:
{
"neuroglancer/precomputed"
:
"https://neuroglancer.humanbrainproject.eu/precomputed/PLI_FOM/BI"
},
"detail"
:
{
"neuroglancer/precomputed"
:
{
"shader"
:
"void main(){ float x = toNormalized(getDataValue()); if (x < 0.1) { emitTransparent(); } else { emitRGB(vec3(0.8 * x, x * 1., 0.8 * x )); } }"
,
"opacity"
:
1
}
}
},
{
"@type"
:
"siibra/volume/v0.0.1"
,
"urls"
:
{
"neuroglancer/precomputed"
:
"https://neuroglancer.humanbrainproject.eu/precomputed/PLI_FOM/BI-TIM"
},
"detail"
:
{
"neuroglancer/precomputed"
:
{
"shader"
:
"void main(){ float x = toNormalized(getDataValue()); if (x > 0.9) { emitTransparent(); } else { emitRGB(vec3(x * 1., x * 0.8, x * 0.8 )); } }"
,
"opacity"
:
1
}
}
},
{
"@type"
:
"siibra/volume/v0.0.1"
,
"urls"
:
{
"neuroglancer/precomputed"
:
"https://neuroglancer.humanbrainproject.eu/precomputed/PLI_FOM/BI-MRI"
},
"detail"
:
{
"neuroglancer/precomputed"
:
{
"shader"
:
"void main(){ float x = toNormalized(getDataValue()); if (x < 0.1) { emitTransparent(); } else { emitRGB(vec3(0.8 * x, 0.8 * x, x * 1. )); } }"
,
"opacity"
:
1
}
}
},
{
"@type"
:
"siibra/volume/v0.0.1"
,
"urls"
:
{
"neuroglancer/precomputed"
:
"https://neuroglancer.humanbrainproject.eu/precomputed/PLI_FOM/BI-MRS"
},
"detail"
:
{
"neuroglancer/precomputed"
:
{
"opacity"
:
1
}
}
}
]
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment