manual comment edits

Core/Algorithms/inc/FTDistributions.h

@@ -3,7 +3,8 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Algorithms/inc/FTDistributions.h
-//! @brief     Defines classes IFTDistribution1D, ..2D, ..2DCauchy
+//! @brief     Defines classes IFTDistribution1D, IFTDistribution2D,
+//!              FTDistribution2DCauchy
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Algorithms/inc/IIntensityFunction.h

@@ -3,7 +3,8 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Algorithms/inc/IIntensityFunction.h
-//! @brief     Defines classes IIntensityFunction, ..Log, ..Sqrt.
+//! @brief     Defines classes IIntensityFunction, IntensityFunctionLog,
+//!              IntensityFunctionSqrt
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Algorithms/inc/InterferenceFunctionStrategies.h

@@ -3,7 +3,7 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Algorithms/inc/InterferenceFunctionStrategies.h
-//! @brief     Includes several files names *Strategy.h.
+//! @brief     Includes several files named *Strategy.h
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Algorithms/inc/MaskCoordinateFunction.h

@@ -3,7 +3,8 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Algorithms/inc/MaskCoordinateFunction.h
-//! @brief     Defines classes MaskCoordinateFunction, MaskCoordinate..Function.
+//! @brief     Defines classes MaskCoordinateFunction, 
+//!              MaskCoordinateRectangleFunction, MaskCoordinateEllipseFunction 
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Fitting/inc/FitSuiteFunctions.h

@@ -3,7 +3,8 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Fitting/inc/FitSuiteFunctions.h
-//! @brief     Defines classes IFitSuiteFunction, FitSuiteChiSquaredFunction, FitSuiteGradientFunction.
+//! @brief     Defines classes IFitSuiteFunction,
+//!              FitSuiteChiSquaredFunction, FitSuiteGradientFunction
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Fitting/inc/IFitSuiteStrategy.h

@@ -3,7 +3,9 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Fitting/inc/IFitSuiteStrategy.h
-//! @brief     Defines classes IFitSuiteStrategy, FitSuiteStrategy...
+//! @brief     Defines classes IFitSuiteStrategy, FitSuiteStrategyDefault,
+//!              FitSuiteStrategyAdjustData, FitSuiteStrategyAdjustParameters,
+//!              FitSuiteStrategyBootstrap
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/FormFactors/src/FormFactorDecoratorTransformation.cpp

@@ -3,7 +3,7 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      FormFactors/src/FormFactorDecoratorTransformation.cpp
-//! @brief     Just an include.
+//! @brief     Just include FormFactorDecoratorTransformation.h
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/PythonAPI/src/PythonOutputData.cpp

@@ -3,7 +3,8 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      PythonAPI/src/PythonOutputData.cpp
-//! @brief     Implements a few global functions: GetOutputDataNdimensions, ..
+//! @brief     Implements a few global functions: GetOutputDataNdimensions,
+//!              GetOutputData, GetOutputDataAxis
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Tools/src/IFactory.cpp

@@ -3,7 +3,7 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Tools/src/IFactory.cpp
-//! @brief     Implements class IFactory by just including IFactory.h.
+//! @brief     Just include IFactory.h
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Tools/src/ISingleton.cpp

@@ -3,7 +3,7 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Tools/src/ISingleton.cpp
-//! @brief     Implements class ISingleton by just including ISingleton.h.
+//! @brief     Just include ISingleton.h
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Tools/src/OutputData.cpp

@@ -3,7 +3,7 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Tools/src/OutputData.cpp
-//! @brief     Implements class OutputData by just including OutputData.h.
+//! @brief     Just include OutputData.h.
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

Core/Tools/src/Types.cpp

@@ -3,7 +3,7 @@
 //  BornAgain: simulate and fit scattering at grazing incidence
 //
 //! @file      Tools/src/Types.cpp
-//! @brief     Implements class Types by just including Types.h.
+//! @brief     Just include Types.h
 //!
 //! @homepage  apps.jcns.fz-juelich.de/BornAgain
 //! @license   GNU General Public License v3 or higher (see COPYING)

pub/core/Doxyfile

@@ -674,7 +674,7 @@ EXCLUDE_SYMLINKS       = NO
 # against the file with absolute path, so to exclude all test directories
 # for example use the pattern */test/*
 
-EXCLUDE_PATTERNS       = # */PythonAPI/*
+EXCLUDE_PATTERNS       = *.pypp.cpp *.pypp.cpp
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the