CMake no longer covers PhysicsManual

Hasn't been used since long; didn't cover FFCatalog:
there is little or no advantage in running Latex and
related commands through 'make'.

CMakeLists.txt

@@ -37,7 +37,6 @@ option(BORNAGAIN_GENERATE_PYTHON_DOCS "Generate python documentation from the do
 option(BORNAGAIN_MANPAGE "Build Unix man page" OFF)
 option(BORNAGAIN_CONFIGURE_DOXY "Configure Doxygen files" OFF)
 option(AUTOGENERATE "Regenerate Py docs, Py wrappers, man page, Doxyfiles" OFF)
-option(BORNAGAIN_USERMANUAL "Build the User Manual" OFF)
 
 option(BUILD_DEBIAN "Build a debian package" OFF)
 option(BORNAGAIN_APPLE_BUNDLE "Create a Mac OS X bundle" OFF)

Doc/PhysicsManual/CMakeLists.txt

-# This CMakeLists.txt is not actively maintained;
-# we usually do not use CMake to build the manual.
-
-project(BornAgainManual NONE)
-
-if(POLICY CMP0046)
-cmake_policy(SET CMP0046 NEW)
-endif()
-
-set(PDFLATEX_COMPILER xelatex)
-
-set(LATEX_COMPILER_FLAGS "-interaction=errorstopmode" CACHE STRING "Flags passed to latex." )
-
-if(BORNAGAIN_USERMANUAL)
-    include(UseLATEX)
-else()
-    # to compile in standalone mode
-    include("../../cmake/modules/UseLATEX.cmake")
-endif()
-
-file(GLOB tex_inputs RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.tex)
-file(GLOB fig_inputs RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} fig/[a-z]*/*)
-
-ADD_LATEX_DOCUMENT(
-    BornAgainManual.tex
-    INPUTS ${tex_inputs} ${fig_inputs}
-    BIBFILES jw7.bib
-    USE_INDEX
-    USE_NOMENCL
-    DEFAULT_PDF
-)

auto/Wrap/doxygen_core.i

@@ -8314,7 +8314,7 @@ Sets depth of the visitor in the composite hierarchy.
 // File: classInstrument.xml
 %feature("docstring") Instrument "
-Assembles beam, detector and their relative positions wrt the sample.
+Assembles beam, detector and their relative positions with respect to the sample.
 C++ includes: Instrument.h
 ";
@@ -17211,76 +17211,76 @@ C++ includes: ZLimits.h
 // File: namespace_0d374.xml
-// File: namespace_0d387.xml
-// File: namespace_0d391.xml
+// File: namespace_0d386.xml
+// File: namespace_0d390.xml
 // File: namespace_0d40.xml
-// File: namespace_0d403.xml
-// File: namespace_0d409.xml
-// File: namespace_0d414.xml
-// File: namespace_0d416.xml
-// File: namespace_0d42.xml
-// File: namespace_0d420.xml
-// File: namespace_0d422.xml
-// File: namespace_0d432.xml
-// File: namespace_0d445.xml
-// File: namespace_0d454.xml
-// File: namespace_0d456.xml
-// File: namespace_0d490.xml
-// File: namespace_0d497.xml
-// File: namespace_0d535.xml
-// File: namespace_0d543.xml
-// File: namespace_0d545.xml
-// File: namespace_0d547.xml
+// File: namespace_0d402.xml
+// File: namespace_0d408.xml
+// File: namespace_0d413.xml
+// File: namespace_0d415.xml
+// File: namespace_0d419.xml
+// File: namespace_0d42.xml
+// File: namespace_0d421.xml
+// File: namespace_0d431.xml
+// File: namespace_0d444.xml
+// File: namespace_0d453.xml
+// File: namespace_0d455.xml
+// File: namespace_0d489.xml
+// File: namespace_0d496.xml
+// File: namespace_0d534.xml
+// File: namespace_0d542.xml
+// File: namespace_0d544.xml
+// File: namespace_0d546.xml
 // File: namespace_0d6.xml
-// File: namespace_0d631.xml
-// File: namespace_0d635.xml
-// File: namespace_0d659.xml
+// File: namespace_0d630.xml
+// File: namespace_0d634.xml
+// File: namespace_0d658.xml
 // File: namespace_0d97.xml
@@ -19616,9 +19616,6 @@ Creates averaged material. Square refractive index of returned material is arith
 // File: InterferenceFunctionUtils_8h.xml
-// File: ISpecularStrategy_8cpp.xml
-
-
 // File: ISpecularStrategy_8h.xml
@@ -20332,6 +20329,10 @@ Generate vertices of centered ellipse with given semi-axes at height z.
 // File: IFactory_8h.xml
 %feature("docstring")  create_new "T* create_new()
+
+Returns new instance of class T.
+
+This templated function is used in catalogues in form of a function pointer 'create_new<T>', with no function arguments supplied. Equivalently, we could use a lambda function '[](){return new T;}'. 
 ";

auto/Wrap/libBornAgainCore.py

@@ -16641,7 +16641,7 @@ class Instrument(INode):
     r"""
-    Assembles beam, detector and their relative positions wrt the sample.
+    Assembles beam, detector and their relative positions with respect to the sample.
     C++ includes: Instrument.h

cmake/bornagain/modules/BornAgainCPack.cmake

@@ -48,7 +48,8 @@ message(STATUS "Source package name: ${CPACK_SOURCE_PACKAGE_FILE_NAME}")
 # Specify which files not to include into the source package generated by make package_source
 set(CPACK_SOURCE_IGNORE_FILES
     ${CPACK_SOURCE_IGNORE_FILES} # first take the default parameters
-    "/Doc/UserManual/"
+    "/Doc/FFCatalog/"
+    "/Doc/PhysicsManual/"
     "/dev-tools/edit-scripts/"
     "/dev-tools/packaging/"
     "/dev-tools/tmp-examples/"
@@ -71,7 +72,6 @@ set(CPACK_SOURCE_IGNORE_FILES
     "\\\\.obj"
     "CMakeLists.txt.user"
     "/bin/release.sh.in" # user will not need it
-    "/cmake/modules/UseLATEX.cmake" # user will not need it
     "/dev-tools/git-utils/cl_lines_of_code.py"
     "/dev-tools/git-utils/qqq.png" # remove this line when unneeded
     ".pro$"