sorted all of Core, some manual editing

Core/Algorithms/DetectorMask.h

Core/FormFactors/FormFactorRipple1.cpp

Core/FormFactors/FormFactorRipple1.h

Core/Geometry/Ellipse.cpp

Core/Geometry/Rectangle.cpp

Core/Geometry/Transform3D.h

Core/InputOutput/IntensityDataIOFactory.cpp

Core/InputOutput/OutputDataIOHelper.cpp

Core/InputOutput/OutputDataReadFactory.cpp

Core/InputOutput/OutputDataReader.cpp

Core/InputOutput/OutputDataWriteFactory.cpp

Core/InputOutput/OutputDataWriteStrategy.cpp

Core/InputOutput/OutputDataWriter.cpp

Core/InputOutput/TiffHandler.cpp

Core/InputOutput/TiffHandler.h

Core/Samples/Crystal.h

Core/Samples/IClusteredParticles.h

Core/Samples/IInterferenceFunction.h

Core/Samples/IMaterial.h

Core/Samples/IParticle.cpp