initial commit

.gitignore

+.idea
\ No newline at end of file

git_lfs_utils/__init__.py

+from utils import GitRepo
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git_lfs_utils/utils.py

+import os
+import git
+
+
+def update_package_list():
+    os.system("conda env export > conda_environment.yml")
+    os.system("conda env export --from-history > conda_independent_environment.yml")
+    os.system("pip freeze > pip_requirements.txt")
+    os.system("pip list --not-required --format freeze > pip_independent_requirements.txt")
+
+
+class GitRepo(git.Repo):
+    def add_all_files(self):
+        if len(self.untracked_files) > 0:
+            untracked_files = "\n".join(["- " + file for file in self.untracked_files])
+            proceed = input(f'Found untracked files. Adding the following untracked files to git: \n{untracked_files}\n'
+                            f'Proceed? Y/n \n')
+            if proceed.lower() == "y" or proceed == "":
+                for f in self.untracked_files:
+                    self.git.add(f)
+            else:
+                raise KeyboardInterrupt
+        changed_files = self.git.diff(None, name_only=True).split('\n')
+        if "" in changed_files:
+            changed_files.remove("")
+        for f in changed_files:
+            self.git.add(f)
+        return self.untracked_files + changed_files
+
+    def commit(self, message="bump", add_all=True, update_packages=True):
+        if update_packages:
+            update_package_list()
+        if add_all:
+            commited_files = self.add_all_files()
+        commit_return = self.git.commit("-m", message)
+        print("\n" + commit_return)
+
+    def git_commit(self, message="processing bump"):
+        self.git.commit("-m", message)
+
+    def git_ammend(self, ):
+        self.git.commit("--amend", "--no-edit")
+
+    def print_status(self):
+        print(self.git.status())
+
+
+def get_git_repo():
+    cwd = os.getcwd()
+    path = cwd
+    repository = None
+    while repository is None:
+        # step upwards in path until a git repo is found or root is reached
+        try:
+            repository = GitRepo(path)
+        except git.exc.InvalidGitRepositoryError:
+            base, directory = os.path.split(path)
+            if len(directory) == 0:
+                raise ValueError(f"Path {cwd} does not contain a git repository.")
+            path = base
+    return repository