From 877c25497a822b8d51f95f3313cd1b68843ed24a Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Fri, 29 Jul 2022 09:06:39 +0200
Subject: [PATCH] feat: add new v1 high res volumes

---
 parcellations/julichbrain_v2_9_0.json |  43 +---------
 regions/human_jba29_hoc1_left.json    | 117 ++++++++++++++++++++++++++
 regions/human_jba29_hoc1_right.json   | 106 +++++++++++++++++++++++
 3 files changed, 224 insertions(+), 42 deletions(-)
 create mode 100644 regions/human_jba29_hoc1_left.json
 create mode 100644 regions/human_jba29_hoc1_right.json

diff --git a/parcellations/julichbrain_v2_9_0.json b/parcellations/julichbrain_v2_9_0.json
index cf893954..afd43c2a 100644
--- a/parcellations/julichbrain_v2_9_0.json
+++ b/parcellations/julichbrain_v2_9_0.json
@@ -5969,48 +5969,7 @@
 												132,
 												147
 											],
-											"datasets": [
-												{
-													"@type": "fzj/tmp/volume_type/v0.0.1",
-													"@id": "fzj/tmp/volume_type/v0.0.1/v1",
-													"name": "Julich Brain v2.5 v1 detailed map volSrc big brain ng precomp lh",
-													"volume_type": "neuroglancer/precomputed",
-													"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/2019_05_01_v1",
-													"detail": {
-														"neuroglancer/precomputed": {
-															"labelIndex": 1,
-															"transform": [
-																[
-																	1,
-																	0,
-																	0,
-																	-70677184
-																],
-																[
-																	0,
-																	1,
-																	0,
-																	-69390000
-																],
-																[
-																	0,
-																	0,
-																	1,
-																	-58788284
-																],
-																[
-																	0,
-																	0,
-																	0,
-																	1
-																]
-															]
-														}
-													},
-													"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
-													"map_type": "labelled"
-												}
-											],
+											"datasets": [],
 											"children": [
 												{
 													"name": "Area hOc1 (V1, 17, CalcS) - left hemisphere",
diff --git a/regions/human_jba29_hoc1_left.json b/regions/human_jba29_hoc1_left.json
new file mode 100644
index 00000000..6beb5b9e
--- /dev/null
+++ b/regions/human_jba29_hoc1_left.json
@@ -0,0 +1,117 @@
+{
+    "@id": "siibra/region/v0.0.1/human_jba29_hoc1_left",
+    "@type": "siibra/region/v0.0.1",
+    "name": "Area hOc1 (V1, 17, CalcS) - left hemisphere",
+    "rgb": [
+        190,
+        132,
+        147
+    ],
+    "parcellation": {
+        "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-290"
+    },
+    "parent": [{
+        "@id": "siibra/region/v0.0.1/human_jba29_hoc1",
+        "name": "Area hOc1 (V1, 17, CalcS)"
+    }],
+    "datasets": [
+        {
+            "@type": "fzj/tmp/volume_type/v0.0.1",
+            "@id": "fzj/tmp/volume_type/v0.0.1/human_jba29_hoc1_left_bigbrain",
+            "name": "Julich Brain v2.9 v1 detailed map volSrc big brain ng precomp lh",
+            "url": "https://neuroglancer-dev.humanbrainproject.eu/precomputed/BigBrainRelease.2015/2022_04_27_hemisplit/labelpropagation/v1/left",
+            "detail": {
+                "neuroglancer/precomputed": {
+                    "labelIndex": 1,
+                    "transform": [[1.0, 0.0, 0.0, -32788851.0], [0.0, 1.0, 0.0, -69490000.0], [0.0, 0.0, 1.0, -13279951.0], [0.0, 0.0, 0.0, 1.0]]
+                }
+            },
+            "space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+                "name": "Big Brain (Histology)"
+            },
+            "volume_type": "neuroglancer/precomputed",
+            "map_type": "labelled"
+        },
+        {
+            "@type": "fzj/tmp/volume_type/v0.0.1",
+            "@id": "fzj/tmp/volume_type/v0.0.1/Area-hOc1-lh-colin",
+            "name": "Probabilistic map of Area hOc1 (V1, 17, CalcS)",
+            "url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/PMs/Area-hOc1/4.2/Area-hOc1_l_N10_nlin2Stdcolin27_4.2_publicP_026bcbe494dc4bfe702f2b1cc927a7c1.nii.gz",
+            "space_id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+                "name": "MNI Colin 27"
+            },
+            "detail": {
+                "nii": {
+                    "labelIndex": 8
+                }
+            },
+            "volume_type": "nii",
+            "map_type": "continuous"
+        },
+        {
+            "@type": "fzj/tmp/volume_type/v0.0.1",
+            "@id": "fzj/tmp/volume_type/v0.0.1/Area-hOc1-lh-mni152",
+            "name": "Probabilistic map of Area hOc1 (V1, 17, CalcS)",
+            "volume_type": "nii",
+            "url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/PMs/Area-hOc1/4.2/Area-hOc1_l_N10_nlin2ICBM152asym2009c_4.2_publicP_026bcbe494dc4bfe702f2b1cc927a7c1.nii.gz",
+            "space_id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+                "name": "MNI 152 ICBM 2009c Nonlinear Asymmetric"
+            },
+            "detail": {
+                "nii": {
+                    "labelIndex": 8
+                }
+            },
+            "map_type": "continuous"
+        },
+        {
+            "@type": "minds/core/dataset/v1.0.0",
+            "kgSchema": "minds/core/dataset/v1.0.0",
+            "kgId": "5c669b77-c981-424a-858d-fe9f527dbc07"
+        },
+		{
+			"@type": "fzj/tmp/volume_type/v0.0.1",
+			"@id": "fzj/tmp/volume_type/v0.0.1/julichbrain-colin27-lh-precomputed",
+			"name": "colin27-lh-precomputed",
+			"volume_type": "neuroglancer/precomputed",
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/precomputed/GapMapPublicMPMAtlas_l_N10_nlin2StdColin27_29_publicDOI_7f7bae194464eb71431c9916614d5f89",
+			"detail": {
+				"neuroglancer/precomputed": {
+                    "labelIndex": 8,
+					"transform": [[1,0,0,-128500000],[0,1,0,-148500000],[0,0,1,-110500000],[0,0,0,1]]
+				}
+			},
+			"space_id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+                "name": "MNI Colin 27"
+            },
+			"map_type": "labelled"
+		},
+		{
+			"@type": "fzj/tmp/volume_type/v0.0.1",
+			"@id": "fzj/tmp/volume_type/v0.0.1/julichbrain-mni152-lh-precomputed",
+			"name": "mni152-lh-precomputed",
+			"volume_type": "neuroglancer/precomputed",
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/precomputed/GapMapPublicMPMAtlas_l_N10_nlin2StdICBM152asym2009c_29_publicDOI_77fea6ffe6f914b6d98fe88e85ff5b1b",
+			"detail": {
+				"neuroglancer/precomputed": {
+                    "labelIndex": 8,
+					"transform": [[1,0,0,-96500000],[0,1,0,-132500000],[0,0,1,-78500000],[0,0,0,1]]
+				}
+			},
+			"space_id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+                "name": "MNI 152 ICBM 2009c Nonlinear Asymmetric"
+            },
+			"map_type": "labelled"
+		}
+    ]
+}
diff --git a/regions/human_jba29_hoc1_right.json b/regions/human_jba29_hoc1_right.json
new file mode 100644
index 00000000..67f1e81d
--- /dev/null
+++ b/regions/human_jba29_hoc1_right.json
@@ -0,0 +1,106 @@
+{
+    "@id": "siibra/region/v0.0.1/human_jba29_hoc1_right",
+    "@type": "siibra/region/v0.0.1",
+    "name": "Area hOc1 (V1, 17, CalcS) - right hemisphere",
+    "rgb": [
+        190,
+        132,
+        147
+    ],
+    "parcellation": {
+        "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-290"
+    },
+    "parent": [{
+        "@id": "siibra/region/v0.0.1/human_jba29_hoc1",
+        "name": "Area hOc1 (V1, 17, CalcS)"
+    }],
+    "datasets": [
+        {
+            "@type": "fzj/tmp/volume_type/v0.0.1",
+            "@id": "fzj/tmp/volume_type/v0.0.1/human_jba29_hoc1_right_bigbrain",
+            "name": "Julich Brain v2.9 v1 detailed map volSrc big brain ng precomp rh",
+            "url": "https://neuroglancer-dev.humanbrainproject.eu/precomputed/BigBrainRelease.2015/2022_04_27_hemisplit/labelpropagation/v1/right",
+            "detail": {
+                "neuroglancer/precomputed": {
+                    "labelIndex": 1,
+                    "transform": [[1.0, 0.0, 0.0, 1310649.0], [0.0, 1.0, 0.0, -68290000.0], [0.0, 0.0, 1.0, -9639284.0], [0.0, 0.0, 0.0, 1.0]]
+                }
+            },
+            "space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+                "name": "Big Brain (Histology)"
+            },
+            "volume_type": "neuroglancer/precomputed",
+            "map_type": "labelled"
+        },
+		{
+			"@type": "fzj/tmp/volume_type/v0.0.1",
+			"@id": "fzj/tmp/volume_type/v0.0.1/julichbrain-colin27-rh-nii",
+			"name": "colin27-rh-nii",
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210714-julichbrain_v290_correctaffine/hbp-d000007_julichbrain-cytoatlas_dev/MPMs/29.0/GapMapPublicMPMAtlas_r_N10_nlin2StdColin27_29_publicDOI_883290e4569b289d35e78decdbc5deb7.nii.gz",
+			"space_id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+                "name": "MNI Colin 27"
+            },
+            "detail": {
+                "nii": {
+                    "labelIndex": 8
+                }
+            },
+			"volume_type": "nii",
+			"map_type": "labelled"
+		},
+        {
+            "@type": "fzj/tmp/volume_type/v0.0.1",
+            "@id": "fzj/tmp/volume_type/v0.0.1/Area-hOc1-rh-colin",
+            "name": "Probabilistic map of Area hOc1 (V1, 17, CalcS)",
+            "url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/PMs/Area-hOc1/4.2/Area-hOc1_r_N10_nlin2Stdcolin27_4.2_publicP_d8d7a22f9ea3b0fbd6f983c15697d834.nii.gz",
+            "space_id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/7f39f7be-445b-47c0-9791-e971c0b6d992",
+                "name": "MNI Colin 27"
+            },
+            "volume_type": "nii",
+            "map_type": "continuous"
+        },
+		{
+			"@type": "fzj/tmp/volume_type/v0.0.1",
+			"@id": "fzj/tmp/volume_type/v0.0.1/julichbrain-mni152-rh-precomputed",
+			"name": "mni152-rh-precomputed",
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/precomputed/GapMapPublicMPMAtlas_r_N10_nlin2StdICBM152asym2009c_29_publicDOI_2b6e644a161af7477fb4328bcd490756",
+			"detail": {
+				"neuroglancer/precomputed": {
+                    "labelIndex": 8,
+					"transform": [[1,0,0,-96500000],[0,1,0,-132500000],[0,0,1,-78500000],[0,0,0,1]]
+				}
+			},
+			"space_id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+                "name": "MNI 152 ICBM 2009c Nonlinear Asymmetric"
+            },
+            "volume_type": "neuroglancer/precomputed",
+			"map_type": "labelled"
+		},
+        {
+            "@type": "fzj/tmp/volume_type/v0.0.1",
+            "@id": "fzj/tmp/volume_type/v0.0.1/Area-hOc1-rh-mni152",
+            "name": "Probabilistic map of Area hOc1 (V1, 17, CalcS)",
+            "url": "https://neuroglancer.humanbrainproject.eu/precomputed/data-repo-ng-bot/20210616-julichbrain-v2.9.0-complete-mpm/PMs/Area-hOc1/4.2/Area-hOc1_r_N10_nlin2ICBM152asym2009c_4.2_publicP_d8d7a22f9ea3b0fbd6f983c15697d834.nii.gz",
+            "space_id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+            "space": {
+                "@id": "minds/core/referencespace/v1.0.0/dafcffc5-4826-4bf1-8ff6-46b8a31ff8e2",
+                "name": "MNI 152 ICBM 2009c Nonlinear Asymmetric"
+            },
+            "volume_type": "nii",
+            "map_type": "continuous"
+        },
+        {
+            "@type": "minds/core/dataset/v1.0.0",
+            "kgSchema": "minds/core/dataset/v1.0.0",
+            "kgId": "5c669b77-c981-424a-858d-fe9f527dbc07"
+        }
+    ]
+}
\ No newline at end of file
-- 
GitLab