From e8b6b16cb8e87236fd3f61492bf1c33cd0a44886 Mon Sep 17 00:00:00 2001
From: "Joachim Wuttke (h)" <j.wuttke@fz-juelich.de>
Date: Wed, 3 Mar 2021 21:54:54 +0100
Subject: [PATCH] Examples + shebang header line
---
.../fit51_Basic/basic_fitting_tutorial.py | 1 +
Examples/fit51_Basic/consecutive_fitting.py | 1 +
Examples/fit51_Basic/minimal_fit_example.py | 1 +
Examples/fit51_Basic/minimizer_settings.py | 1 +
Examples/fit52_Advanced/find_background.py | 1 +
Examples/fit52_Advanced/fit_along_slices.py | 1 +
Examples/fit52_Advanced/fit_with_masks.py | 1 +
Examples/fit52_Advanced/multiple_datasets.py | 1 +
.../custom_objective_function.py | 1 +
.../fit54_ExternalMinimizer/lmfit_basics.py | 1 +
.../lmfit_with_plotting.py | 1 +
.../fit55_SpecularIntro/FitSpecularBasics.py | 1 +
.../FitWithUncertainties.py | 1 +
.../PolarizedSpinAsymmetryFit.py | 1 +
.../RealLifeReflectometryFitting.py | 1 +
.../fit56_SpecularAdvanced/Honeycomb_fit.py | 1 +
.../fit56_SpecularAdvanced/Pt_layer_fit.py | 1 +
Examples/fit61_Galaxi/fit_galaxi_data.py | 1 +
Examples/fit61_Galaxi/sample_builder.py | 1 +
Examples/scatter2d/ApproximationDA.py | 1 +
Examples/scatter2d/ApproximationLMA.py | 1 +
Examples/scatter2d/ApproximationSSCA.py | 1 +
Examples/scatter2d/BeamDivergence.py | 1 +
Examples/scatter2d/BiMaterialCylinders.py | 1 +
Examples/scatter2d/BoxesWithSpecularPeak.py | 1 +
Examples/scatter2d/BuriedParticles.py | 1 +
Examples/scatter2d/ConstantBackground.py | 1 +
Examples/scatter2d/CoreShellNanoparticles.py | 1 +
Examples/scatter2d/CorrelatedRoughness.py | 1 +
.../scatter2d/CosineRipplesAtRectLattice.py | 1 +
Examples/scatter2d/CylindersAndPrisms.py | 1 +
Examples/scatter2d/CylindersInAverageLayer.py | 1 +
Examples/scatter2d/CylindersInBA.py | 1 +
Examples/scatter2d/CylindersInDWBA.py | 1 +
.../CylindersWithSizeDistribution.py | 1 +
.../scatter2d/DetectorResolutionFunction.py | 1 +
.../scatter2d/HalfSpheresInAverageTopLayer.py | 1 +
.../scatter2d/HexagonalLatticesWithBasis.py | 1 +
.../Interference1DRadialParaCrystal.py | 1 +
.../Interference2DCenteredSquareLattice.py | 1 +
.../Interference2DLatticeSumOfRotated.py | 1 +
.../scatter2d/Interference2DParaCrystal.py | 1 +
.../Interference2DRotatedSquareLattice.py | 1 +
.../Interference2DSquareFiniteLattice.py | 1 +
.../scatter2d/Interference2DSquareLattice.py | 1 +
Examples/scatter2d/MagneticSpheres.py | 1 +
Examples/scatter2d/MesoCrystal.py | 1 +
.../scatter2d/ParticlesCrossingInterface.py | 1 +
Examples/scatter2d/RectangularGrating.py | 1 +
Examples/scatter2d/RotatedPyramids.py | 1 +
Examples/scatter2d/SpheresAtHexLattice.py | 1 +
Examples/scatter2d/TriangularRipple.py | 1 +
...TwoTypesOfCylindersWithSizeDistribution.py | 1 +
Examples/specular/BasicSpecularSimulation.py | 1 +
Examples/specular/BeamAngularDivergence.py | 1 +
Examples/specular/BeamFullDivergence.py | 1 +
Examples/specular/TOFRWithResolution.py | 1 +
.../specular/TimeOfFlightReflectometry.py | 1 +
Examples/varia/AccessingSimulationResults.py | 1 +
Examples/varia/AllFormFactorsAvailable.py | 1 +
Examples/varia/AxesInDifferentUnits.py | 1 +
Examples/varia/BasicPolarizedReflectometry.py | 1 +
Examples/varia/CustomFormFactor.py | 1 +
Examples/varia/DepthProbe.py | 1 +
Examples/varia/FindPeaks.py | 1 +
Examples/varia/FootprintCorrection.py | 1 +
Examples/varia/GratingMC.py | 1 +
Examples/varia/Interference1DLattice.py | 1 +
Examples/varia/LargeParticlesFormFactor.py | 1 +
Examples/varia/MaterialProfile.py | 1 +
.../varia/MaterialProfileWithParticles.py | 1 +
Examples/varia/OffSpecularSimulation.py | 1 +
Examples/varia/PolarizedNoAnalyzer.py | 1 +
.../PolarizedNonperfectAnalyzerPolarizer.py | 1 +
Examples/varia/PolarizedSANS.py | 1 +
Examples/varia/PolarizedSpinAsymmetry.py | 1 +
Examples/varia/PolarizedSpinFlip.py | 1 +
Examples/varia/RectangularDetector.py | 1 +
Examples/varia/ResonatorOffSpecSetup.py | 1 +
Examples/varia/RoughnessModel.py | 1 +
Examples/varia/SimulationParameters.py | 1 +
.../varia/SpecularSimulationWithRoughness.py | 1 +
auto/Wrap/doxygenBase.i | 5 +-
auto/Wrap/doxygenFit.i | 165 ++++++++++--------
auto/Wrap/doxygenSample.i | 2 +-
85 files changed, 177 insertions(+), 77 deletions(-)
diff --git a/Examples/fit51_Basic/basic_fitting_tutorial.py b/Examples/fit51_Basic/basic_fitting_tutorial.py
index 0ae9626101e..f87b6f6cc0a 100644
--- a/Examples/fit51_Basic/basic_fitting_tutorial.py
+++ b/Examples/fit51_Basic/basic_fitting_tutorial.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: 4 parameters fit for mixture of cylinders and prisms on top
of substrate.
diff --git a/Examples/fit51_Basic/consecutive_fitting.py b/Examples/fit51_Basic/consecutive_fitting.py
index 59193cf7f5d..8b6a79b248b 100644
--- a/Examples/fit51_Basic/consecutive_fitting.py
+++ b/Examples/fit51_Basic/consecutive_fitting.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: running one fit after another using different minimizers.
diff --git a/Examples/fit51_Basic/minimal_fit_example.py b/Examples/fit51_Basic/minimal_fit_example.py
index cf2883a060d..4cac7fe64a2 100644
--- a/Examples/fit51_Basic/minimal_fit_example.py
+++ b/Examples/fit51_Basic/minimal_fit_example.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Minimal working fit examples: finds radius of sphere in Born approximation.
"""
diff --git a/Examples/fit51_Basic/minimizer_settings.py b/Examples/fit51_Basic/minimizer_settings.py
index dfffad0b1fa..469cd26e36b 100644
--- a/Examples/fit51_Basic/minimizer_settings.py
+++ b/Examples/fit51_Basic/minimizer_settings.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: running same fit using various minimizer and their settings.
"""
diff --git a/Examples/fit52_Advanced/find_background.py b/Examples/fit52_Advanced/find_background.py
index 001f8382bce..5b32f9d604a 100644
--- a/Examples/fit52_Advanced/find_background.py
+++ b/Examples/fit52_Advanced/find_background.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: looking for background and scale factors.
diff --git a/Examples/fit52_Advanced/fit_along_slices.py b/Examples/fit52_Advanced/fit_along_slices.py
index 52e1fe7ad1c..bd8d595d331 100644
--- a/Examples/fit52_Advanced/fit_along_slices.py
+++ b/Examples/fit52_Advanced/fit_along_slices.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: fit along slices
"""
diff --git a/Examples/fit52_Advanced/fit_with_masks.py b/Examples/fit52_Advanced/fit_with_masks.py
index 6c00d5a7a62..eae6aeaa382 100644
--- a/Examples/fit52_Advanced/fit_with_masks.py
+++ b/Examples/fit52_Advanced/fit_with_masks.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: fit with masks
"""
diff --git a/Examples/fit52_Advanced/multiple_datasets.py b/Examples/fit52_Advanced/multiple_datasets.py
index 96a02b7ca04..de24da26ecf 100644
--- a/Examples/fit52_Advanced/multiple_datasets.py
+++ b/Examples/fit52_Advanced/multiple_datasets.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting example: simultaneous fit of two datasets
"""
diff --git a/Examples/fit53_CustomObjective/custom_objective_function.py b/Examples/fit53_CustomObjective/custom_objective_function.py
index c9d41a5d81f..1690de82ffa 100644
--- a/Examples/fit53_CustomObjective/custom_objective_function.py
+++ b/Examples/fit53_CustomObjective/custom_objective_function.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Using custom objective function to fit GISAS data.
diff --git a/Examples/fit54_ExternalMinimizer/lmfit_basics.py b/Examples/fit54_ExternalMinimizer/lmfit_basics.py
index a2bd371deff..2cc226890c9 100644
--- a/Examples/fit54_ExternalMinimizer/lmfit_basics.py
+++ b/Examples/fit54_ExternalMinimizer/lmfit_basics.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
External minimize: using lmfit minimizers for BornAgain fits.
"""
diff --git a/Examples/fit54_ExternalMinimizer/lmfit_with_plotting.py b/Examples/fit54_ExternalMinimizer/lmfit_with_plotting.py
index 2c78516ec5e..c8414a9b13d 100644
--- a/Examples/fit54_ExternalMinimizer/lmfit_with_plotting.py
+++ b/Examples/fit54_ExternalMinimizer/lmfit_with_plotting.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
External minimize: using lmfit minimizers for BornAgain fits.
Fit progress is plotted using lmfit iteration calbback function.
diff --git a/Examples/fit55_SpecularIntro/FitSpecularBasics.py b/Examples/fit55_SpecularIntro/FitSpecularBasics.py
index 0a6b67271af..f914dcbb25d 100644
--- a/Examples/fit55_SpecularIntro/FitSpecularBasics.py
+++ b/Examples/fit55_SpecularIntro/FitSpecularBasics.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Example demonstrates how to fit specular data.
Our sample represents twenty interchanging layers of Ti and Ni. We will fit
diff --git a/Examples/fit55_SpecularIntro/FitWithUncertainties.py b/Examples/fit55_SpecularIntro/FitWithUncertainties.py
index 56b19c690fc..416685355b4 100644
--- a/Examples/fit55_SpecularIntro/FitWithUncertainties.py
+++ b/Examples/fit55_SpecularIntro/FitWithUncertainties.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Example demonstrates how to fit specular data.
Our sample represents twenty interchanging layers of Ti and Ni. We will fit
diff --git a/Examples/fit55_SpecularIntro/PolarizedSpinAsymmetryFit.py b/Examples/fit55_SpecularIntro/PolarizedSpinAsymmetryFit.py
index 970338e1de1..5262ea8031c 100644
--- a/Examples/fit55_SpecularIntro/PolarizedSpinAsymmetryFit.py
+++ b/Examples/fit55_SpecularIntro/PolarizedSpinAsymmetryFit.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
This fitting and simulation example demonstrates how to replicate
the fitting example "Magnetically Dead Layers in Spinel Films"
diff --git a/Examples/fit55_SpecularIntro/RealLifeReflectometryFitting.py b/Examples/fit55_SpecularIntro/RealLifeReflectometryFitting.py
index d0b061bdffe..7c7aabe6ae7 100644
--- a/Examples/fit55_SpecularIntro/RealLifeReflectometryFitting.py
+++ b/Examples/fit55_SpecularIntro/RealLifeReflectometryFitting.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Real life example:
Fitting data from an X-ray reflectometer
diff --git a/Examples/fit56_SpecularAdvanced/Honeycomb_fit.py b/Examples/fit56_SpecularAdvanced/Honeycomb_fit.py
index e5977866c95..d6ead29c29f 100644
--- a/Examples/fit56_SpecularAdvanced/Honeycomb_fit.py
+++ b/Examples/fit56_SpecularAdvanced/Honeycomb_fit.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
This example demonstrates how to fit a complex experimental setup using BornAgain.
It is based on real data published in https://doi.org/10.1002/advs.201700856
diff --git a/Examples/fit56_SpecularAdvanced/Pt_layer_fit.py b/Examples/fit56_SpecularAdvanced/Pt_layer_fit.py
index 1eb2a1f861b..e06ddd9c538 100644
--- a/Examples/fit56_SpecularAdvanced/Pt_layer_fit.py
+++ b/Examples/fit56_SpecularAdvanced/Pt_layer_fit.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
This example demonstrates how to fit actual experimental data
by M. Fitzsimmons et al. that is published in
diff --git a/Examples/fit61_Galaxi/fit_galaxi_data.py b/Examples/fit61_Galaxi/fit_galaxi_data.py
index fb7d6fcd69e..faeb0723acd 100644
--- a/Examples/fit61_Galaxi/fit_galaxi_data.py
+++ b/Examples/fit61_Galaxi/fit_galaxi_data.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Fitting experimental data: spherical nanoparticles with size distribution
in 3 layers system (experiment at GALAXI).
diff --git a/Examples/fit61_Galaxi/sample_builder.py b/Examples/fit61_Galaxi/sample_builder.py
index 3ada2bdcb3f..b9a919eca84 100644
--- a/Examples/fit61_Galaxi/sample_builder.py
+++ b/Examples/fit61_Galaxi/sample_builder.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
3 layers system (substrate, teflon, air).
Vacuum layer is populated with spheres with size distribution.
diff --git a/Examples/scatter2d/ApproximationDA.py b/Examples/scatter2d/ApproximationDA.py
index f31561b356b..6fbd99ed31d 100644
--- a/Examples/scatter2d/ApproximationDA.py
+++ b/Examples/scatter2d/ApproximationDA.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders of two different sizes in Decoupling Approximation
"""
diff --git a/Examples/scatter2d/ApproximationLMA.py b/Examples/scatter2d/ApproximationLMA.py
index 5ac53ba473a..ee4dc132730 100644
--- a/Examples/scatter2d/ApproximationLMA.py
+++ b/Examples/scatter2d/ApproximationLMA.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders of two different sizes in Local Monodisperse Approximation
"""
diff --git a/Examples/scatter2d/ApproximationSSCA.py b/Examples/scatter2d/ApproximationSSCA.py
index 0f755324a38..b2f8a8e5c82 100644
--- a/Examples/scatter2d/ApproximationSSCA.py
+++ b/Examples/scatter2d/ApproximationSSCA.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders of two different sizes in Size-Spacing Coupling Approximation
"""
diff --git a/Examples/scatter2d/BeamDivergence.py b/Examples/scatter2d/BeamDivergence.py
index 7427e5be5d0..9045ea1767d 100644
--- a/Examples/scatter2d/BeamDivergence.py
+++ b/Examples/scatter2d/BeamDivergence.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinder form factor in DWBA with beam divergence
"""
diff --git a/Examples/scatter2d/BiMaterialCylinders.py b/Examples/scatter2d/BiMaterialCylinders.py
index 984d9b730d9..275f56f833f 100644
--- a/Examples/scatter2d/BiMaterialCylinders.py
+++ b/Examples/scatter2d/BiMaterialCylinders.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylindrical particle made from two materials.
Particle crosses air/substrate interface.
diff --git a/Examples/scatter2d/BoxesWithSpecularPeak.py b/Examples/scatter2d/BoxesWithSpecularPeak.py
index 045e2d774ee..aab73f75c80 100644
--- a/Examples/scatter2d/BoxesWithSpecularPeak.py
+++ b/Examples/scatter2d/BoxesWithSpecularPeak.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Square lattice of boxes on substrate (including the specular peak)
"""
diff --git a/Examples/scatter2d/BuriedParticles.py b/Examples/scatter2d/BuriedParticles.py
index 8f632ef8f1f..806d1d379f6 100644
--- a/Examples/scatter2d/BuriedParticles.py
+++ b/Examples/scatter2d/BuriedParticles.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Spherical particles embedded in the middle of the layer on top of substrate.
"""
diff --git a/Examples/scatter2d/ConstantBackground.py b/Examples/scatter2d/ConstantBackground.py
index 46211573d77..9fbb322fd87 100644
--- a/Examples/scatter2d/ConstantBackground.py
+++ b/Examples/scatter2d/ConstantBackground.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinder form factor in DWBA with constant background
"""
diff --git a/Examples/scatter2d/CoreShellNanoparticles.py b/Examples/scatter2d/CoreShellNanoparticles.py
index d47fa529f1c..463858ed9d3 100644
--- a/Examples/scatter2d/CoreShellNanoparticles.py
+++ b/Examples/scatter2d/CoreShellNanoparticles.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Core shell nanoparticles
"""
diff --git a/Examples/scatter2d/CorrelatedRoughness.py b/Examples/scatter2d/CorrelatedRoughness.py
index 6e844179cce..c92cb436be1 100644
--- a/Examples/scatter2d/CorrelatedRoughness.py
+++ b/Examples/scatter2d/CorrelatedRoughness.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
MultiLayer with correlated roughness
"""
diff --git a/Examples/scatter2d/CosineRipplesAtRectLattice.py b/Examples/scatter2d/CosineRipplesAtRectLattice.py
index 741ba3e5ada..d5bf586e48b 100644
--- a/Examples/scatter2d/CosineRipplesAtRectLattice.py
+++ b/Examples/scatter2d/CosineRipplesAtRectLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cosine ripple on a 2D lattice
"""
diff --git a/Examples/scatter2d/CylindersAndPrisms.py b/Examples/scatter2d/CylindersAndPrisms.py
index a14fcef8837..7db298a07b4 100644
--- a/Examples/scatter2d/CylindersAndPrisms.py
+++ b/Examples/scatter2d/CylindersAndPrisms.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Mixture of cylinders and prisms without interference
"""
diff --git a/Examples/scatter2d/CylindersInAverageLayer.py b/Examples/scatter2d/CylindersInAverageLayer.py
index 410a434a9cf..55c7e31fa33 100644
--- a/Examples/scatter2d/CylindersInAverageLayer.py
+++ b/Examples/scatter2d/CylindersInAverageLayer.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Square lattice of cylinders inside finite layer with usage of average material
"""
diff --git a/Examples/scatter2d/CylindersInBA.py b/Examples/scatter2d/CylindersInBA.py
index 64d5c7b3711..27be2a5261b 100644
--- a/Examples/scatter2d/CylindersInBA.py
+++ b/Examples/scatter2d/CylindersInBA.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinder form factor in Born approximation
"""
diff --git a/Examples/scatter2d/CylindersInDWBA.py b/Examples/scatter2d/CylindersInDWBA.py
index 84360e98e9f..a9b18ba2e49 100644
--- a/Examples/scatter2d/CylindersInDWBA.py
+++ b/Examples/scatter2d/CylindersInDWBA.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinder form factor in DWBA
"""
diff --git a/Examples/scatter2d/CylindersWithSizeDistribution.py b/Examples/scatter2d/CylindersWithSizeDistribution.py
index 398dc1e219d..fcc66e4795e 100644
--- a/Examples/scatter2d/CylindersWithSizeDistribution.py
+++ b/Examples/scatter2d/CylindersWithSizeDistribution.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders with size distribution
"""
diff --git a/Examples/scatter2d/DetectorResolutionFunction.py b/Examples/scatter2d/DetectorResolutionFunction.py
index efe1718d899..8eeaf26f000 100644
--- a/Examples/scatter2d/DetectorResolutionFunction.py
+++ b/Examples/scatter2d/DetectorResolutionFunction.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinder form factor in DWBA with detector resolution function applied
"""
diff --git a/Examples/scatter2d/HalfSpheresInAverageTopLayer.py b/Examples/scatter2d/HalfSpheresInAverageTopLayer.py
index dd82a0df3f9..d3328cb5946 100644
--- a/Examples/scatter2d/HalfSpheresInAverageTopLayer.py
+++ b/Examples/scatter2d/HalfSpheresInAverageTopLayer.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Square lattice of half spheres on substrate with usage of average material
and slicing
diff --git a/Examples/scatter2d/HexagonalLatticesWithBasis.py b/Examples/scatter2d/HexagonalLatticesWithBasis.py
index 9f83af14f31..95335e8009a 100644
--- a/Examples/scatter2d/HexagonalLatticesWithBasis.py
+++ b/Examples/scatter2d/HexagonalLatticesWithBasis.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Spheres on two hexagonal close packed layers
"""
diff --git a/Examples/scatter2d/Interference1DRadialParaCrystal.py b/Examples/scatter2d/Interference1DRadialParaCrystal.py
index 2b0033bfffe..0915d819a30 100644
--- a/Examples/scatter2d/Interference1DRadialParaCrystal.py
+++ b/Examples/scatter2d/Interference1DRadialParaCrystal.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
radial paracrystal
"""
diff --git a/Examples/scatter2d/Interference2DCenteredSquareLattice.py b/Examples/scatter2d/Interference2DCenteredSquareLattice.py
index ba72804532f..1ce18932a8c 100644
--- a/Examples/scatter2d/Interference2DCenteredSquareLattice.py
+++ b/Examples/scatter2d/Interference2DCenteredSquareLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
2D lattice with disorder, centered square lattice
"""
diff --git a/Examples/scatter2d/Interference2DLatticeSumOfRotated.py b/Examples/scatter2d/Interference2DLatticeSumOfRotated.py
index f64b969c613..9866a4a5373 100644
--- a/Examples/scatter2d/Interference2DLatticeSumOfRotated.py
+++ b/Examples/scatter2d/Interference2DLatticeSumOfRotated.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
import bornagain as ba
from bornagain import deg, nm
diff --git a/Examples/scatter2d/Interference2DParaCrystal.py b/Examples/scatter2d/Interference2DParaCrystal.py
index 90bb8b7f7f8..77d5ba2efce 100644
--- a/Examples/scatter2d/Interference2DParaCrystal.py
+++ b/Examples/scatter2d/Interference2DParaCrystal.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
2D paracrystal
"""
diff --git a/Examples/scatter2d/Interference2DRotatedSquareLattice.py b/Examples/scatter2d/Interference2DRotatedSquareLattice.py
index 22ec4a4222c..09595e8a75f 100644
--- a/Examples/scatter2d/Interference2DRotatedSquareLattice.py
+++ b/Examples/scatter2d/Interference2DRotatedSquareLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders on a rotated 2D lattice
"""
diff --git a/Examples/scatter2d/Interference2DSquareFiniteLattice.py b/Examples/scatter2d/Interference2DSquareFiniteLattice.py
index 32f6f7c3be1..aa6831b1c70 100644
--- a/Examples/scatter2d/Interference2DSquareFiniteLattice.py
+++ b/Examples/scatter2d/Interference2DSquareFiniteLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders on a 2D square lattice
"""
diff --git a/Examples/scatter2d/Interference2DSquareLattice.py b/Examples/scatter2d/Interference2DSquareLattice.py
index b843d880185..b8c679c8ebc 100644
--- a/Examples/scatter2d/Interference2DSquareLattice.py
+++ b/Examples/scatter2d/Interference2DSquareLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylinders on a 2D square lattice
"""
diff --git a/Examples/scatter2d/MagneticSpheres.py b/Examples/scatter2d/MagneticSpheres.py
index ab0431edaf5..d8389c08fcc 100644
--- a/Examples/scatter2d/MagneticSpheres.py
+++ b/Examples/scatter2d/MagneticSpheres.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simulation demo: magnetic spheres in substrate
"""
diff --git a/Examples/scatter2d/MesoCrystal.py b/Examples/scatter2d/MesoCrystal.py
index 149c9c171cd..fa7a0cbca3e 100644
--- a/Examples/scatter2d/MesoCrystal.py
+++ b/Examples/scatter2d/MesoCrystal.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Cylindrical mesocrystal on a substrate
"""
diff --git a/Examples/scatter2d/ParticlesCrossingInterface.py b/Examples/scatter2d/ParticlesCrossingInterface.py
index ed344c9cfa8..bf4d512400b 100644
--- a/Examples/scatter2d/ParticlesCrossingInterface.py
+++ b/Examples/scatter2d/ParticlesCrossingInterface.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
This example demonstrates new experimental feature of release-1.8.0:
particles can now cross interfaces.
diff --git a/Examples/scatter2d/RectangularGrating.py b/Examples/scatter2d/RectangularGrating.py
index 72b827ef2ef..640b24778ab 100644
--- a/Examples/scatter2d/RectangularGrating.py
+++ b/Examples/scatter2d/RectangularGrating.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simulation of grating using very long boxes and 1D lattice.
Monte-carlo integration is used to get rid of
diff --git a/Examples/scatter2d/RotatedPyramids.py b/Examples/scatter2d/RotatedPyramids.py
index 55e7822bca7..477807ae07a 100644
--- a/Examples/scatter2d/RotatedPyramids.py
+++ b/Examples/scatter2d/RotatedPyramids.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Rotated pyramids on top of substrate
"""
diff --git a/Examples/scatter2d/SpheresAtHexLattice.py b/Examples/scatter2d/SpheresAtHexLattice.py
index 3b3ca8c0d9e..a3e8f359a65 100644
--- a/Examples/scatter2d/SpheresAtHexLattice.py
+++ b/Examples/scatter2d/SpheresAtHexLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Spheres on a hexagonal lattice
"""
diff --git a/Examples/scatter2d/TriangularRipple.py b/Examples/scatter2d/TriangularRipple.py
index df049044dfb..6f7dddc73f6 100644
--- a/Examples/scatter2d/TriangularRipple.py
+++ b/Examples/scatter2d/TriangularRipple.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Sample from the article D. Babonneau et. al., Phys. Rev. B 85, 235415, 2012 (Fig.3)
"""
diff --git a/Examples/scatter2d/TwoTypesOfCylindersWithSizeDistribution.py b/Examples/scatter2d/TwoTypesOfCylindersWithSizeDistribution.py
index b7bdd862d8d..e3089e34e46 100644
--- a/Examples/scatter2d/TwoTypesOfCylindersWithSizeDistribution.py
+++ b/Examples/scatter2d/TwoTypesOfCylindersWithSizeDistribution.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Mixture cylinder particles with different size distribution
"""
diff --git a/Examples/specular/BasicSpecularSimulation.py b/Examples/specular/BasicSpecularSimulation.py
index 283e14ab641..491a1e53820 100644
--- a/Examples/specular/BasicSpecularSimulation.py
+++ b/Examples/specular/BasicSpecularSimulation.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Basic example of specular simulation with BornAgain.
diff --git a/Examples/specular/BeamAngularDivergence.py b/Examples/specular/BeamAngularDivergence.py
index a8db4eb7ac4..27f9d9c4e63 100644
--- a/Examples/specular/BeamAngularDivergence.py
+++ b/Examples/specular/BeamAngularDivergence.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of taking into account beam angular divergence
and beam footprint correction in reflectometry calculations
diff --git a/Examples/specular/BeamFullDivergence.py b/Examples/specular/BeamFullDivergence.py
index 21d34bd0956..2aac626629c 100644
--- a/Examples/specular/BeamFullDivergence.py
+++ b/Examples/specular/BeamFullDivergence.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of taking into account beam angular and wavelength
divergence in reflectometry calculations with BornAgain.
diff --git a/Examples/specular/TOFRWithResolution.py b/Examples/specular/TOFRWithResolution.py
index b8a5ed34096..f7d3783571c 100644
--- a/Examples/specular/TOFRWithResolution.py
+++ b/Examples/specular/TOFRWithResolution.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of defining reflectometry instrument
for time of flight experiment. In this example
diff --git a/Examples/specular/TimeOfFlightReflectometry.py b/Examples/specular/TimeOfFlightReflectometry.py
index 02709aa98b6..d81eace85f5 100644
--- a/Examples/specular/TimeOfFlightReflectometry.py
+++ b/Examples/specular/TimeOfFlightReflectometry.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of defining reflectometry instrument
for time of flight experiment. In this example
diff --git a/Examples/varia/AccessingSimulationResults.py b/Examples/varia/AccessingSimulationResults.py
index 068b7ba7c1a..b99f0114448 100644
--- a/Examples/varia/AccessingSimulationResults.py
+++ b/Examples/varia/AccessingSimulationResults.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Extended example for simulation results treatment (cropping, slicing, exporting)
The standard "Cylinders in DWBA" sample is used to setup the simulation.
diff --git a/Examples/varia/AllFormFactorsAvailable.py b/Examples/varia/AllFormFactorsAvailable.py
index e412aad4baa..b7ecd5bd3fe 100644
--- a/Examples/varia/AllFormFactorsAvailable.py
+++ b/Examples/varia/AllFormFactorsAvailable.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
All form factors available in BornAgain in the Born Approximation
"""
diff --git a/Examples/varia/AxesInDifferentUnits.py b/Examples/varia/AxesInDifferentUnits.py
index e657d8f701d..09d0919d796 100644
--- a/Examples/varia/AxesInDifferentUnits.py
+++ b/Examples/varia/AxesInDifferentUnits.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
In this example we demonstrate how to plot simulation results with
axes in different units (nbins, mm, degs and QyQz).
diff --git a/Examples/varia/BasicPolarizedReflectometry.py b/Examples/varia/BasicPolarizedReflectometry.py
index 11c3d85fd11..1783e0672aa 100644
--- a/Examples/varia/BasicPolarizedReflectometry.py
+++ b/Examples/varia/BasicPolarizedReflectometry.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of computing reflectivity on a
magnetized sample.
diff --git a/Examples/varia/CustomFormFactor.py b/Examples/varia/CustomFormFactor.py
index 5e416d89f17..2f962490866 100644
--- a/Examples/varia/CustomFormFactor.py
+++ b/Examples/varia/CustomFormFactor.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Custom form factor in DWBA.
"""
diff --git a/Examples/varia/DepthProbe.py b/Examples/varia/DepthProbe.py
index 284d721c247..c954d3dc36b 100644
--- a/Examples/varia/DepthProbe.py
+++ b/Examples/varia/DepthProbe.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Basic example of depth-probe simulation with BornAgain.
Sample structure:
diff --git a/Examples/varia/FindPeaks.py b/Examples/varia/FindPeaks.py
index a0d8d9ea892..e312c82980f 100644
--- a/Examples/varia/FindPeaks.py
+++ b/Examples/varia/FindPeaks.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simulation of grating using very long boxes and 1D lattice.
Monte-carlo integration is used to get rid of
diff --git a/Examples/varia/FootprintCorrection.py b/Examples/varia/FootprintCorrection.py
index 17e911b84da..12d46ac9471 100644
--- a/Examples/varia/FootprintCorrection.py
+++ b/Examples/varia/FootprintCorrection.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Specular simulation with a footprint correction
for a square beam
diff --git a/Examples/varia/GratingMC.py b/Examples/varia/GratingMC.py
index 87fd859ebf5..d2cee7b4c29 100644
--- a/Examples/varia/GratingMC.py
+++ b/Examples/varia/GratingMC.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simulation of grating using very long boxes and 1D lattice.
Monte-carlo integration is used to get rid of
diff --git a/Examples/varia/Interference1DLattice.py b/Examples/varia/Interference1DLattice.py
index 9f0d93109e5..ee0e49a2b3a 100644
--- a/Examples/varia/Interference1DLattice.py
+++ b/Examples/varia/Interference1DLattice.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simulation of grating using very long boxes and 1D lattice.
Monte-carlo integration is used to get rid of
diff --git a/Examples/varia/LargeParticlesFormFactor.py b/Examples/varia/LargeParticlesFormFactor.py
index ab986f06297..219737a9900 100644
--- a/Examples/varia/LargeParticlesFormFactor.py
+++ b/Examples/varia/LargeParticlesFormFactor.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Large cylinders in DWBA.
diff --git a/Examples/varia/MaterialProfile.py b/Examples/varia/MaterialProfile.py
index 423a7cbfeda..82bd3391d5b 100644
--- a/Examples/varia/MaterialProfile.py
+++ b/Examples/varia/MaterialProfile.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Basic example for producing a profile of SLD of a multilayer.
"""
diff --git a/Examples/varia/MaterialProfileWithParticles.py b/Examples/varia/MaterialProfileWithParticles.py
index ffa2224a273..02f7b25910e 100644
--- a/Examples/varia/MaterialProfileWithParticles.py
+++ b/Examples/varia/MaterialProfileWithParticles.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Example for producing a profile of SLD of a multilayer with particles
and slicing.
diff --git a/Examples/varia/OffSpecularSimulation.py b/Examples/varia/OffSpecularSimulation.py
index fb437dd3444..023e03050a1 100644
--- a/Examples/varia/OffSpecularSimulation.py
+++ b/Examples/varia/OffSpecularSimulation.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Long boxes at 1D lattice, ba.OffSpecular simulation
"""
diff --git a/Examples/varia/PolarizedNoAnalyzer.py b/Examples/varia/PolarizedNoAnalyzer.py
index a2d83342b89..6c1ec76a783 100644
--- a/Examples/varia/PolarizedNoAnalyzer.py
+++ b/Examples/varia/PolarizedNoAnalyzer.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of computing splin-flip reflectivity from
a magnetized sample.
diff --git a/Examples/varia/PolarizedNonperfectAnalyzerPolarizer.py b/Examples/varia/PolarizedNonperfectAnalyzerPolarizer.py
index afda3b0bf9b..5c47342d9fd 100644
--- a/Examples/varia/PolarizedNonperfectAnalyzerPolarizer.py
+++ b/Examples/varia/PolarizedNonperfectAnalyzerPolarizer.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example that shows how to simulate
a non-perfect polarizer and analyzer
diff --git a/Examples/varia/PolarizedSANS.py b/Examples/varia/PolarizedSANS.py
index 00595d49e69..7c07918c1ac 100644
--- a/Examples/varia/PolarizedSANS.py
+++ b/Examples/varia/PolarizedSANS.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simple example demonstrating how polarized SANS experiments can be
simulated with BornAgain.
diff --git a/Examples/varia/PolarizedSpinAsymmetry.py b/Examples/varia/PolarizedSpinAsymmetry.py
index c38a1566580..b5e4d71c057 100644
--- a/Examples/varia/PolarizedSpinAsymmetry.py
+++ b/Examples/varia/PolarizedSpinAsymmetry.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
This simulation example demonstrates how to replicate the
fitting example "Magnetically Dead Layers in Spinel Films"
diff --git a/Examples/varia/PolarizedSpinFlip.py b/Examples/varia/PolarizedSpinFlip.py
index d138358ed66..c393b7bf5cd 100644
--- a/Examples/varia/PolarizedSpinFlip.py
+++ b/Examples/varia/PolarizedSpinFlip.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
An example of computing splin-flip reflectivity from
a magnetized sample.
diff --git a/Examples/varia/RectangularDetector.py b/Examples/varia/RectangularDetector.py
index 81cfa4d73d9..030b6be9071 100644
--- a/Examples/varia/RectangularDetector.py
+++ b/Examples/varia/RectangularDetector.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Simulation with rectangular detector. Pilatus3-1M detector is used as an example.
Results will be compared against simulation with spherical detector.
diff --git a/Examples/varia/ResonatorOffSpecSetup.py b/Examples/varia/ResonatorOffSpecSetup.py
index fe5faa1480e..66ab0dea37c 100644
--- a/Examples/varia/ResonatorOffSpecSetup.py
+++ b/Examples/varia/ResonatorOffSpecSetup.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Resonator in off-specular experiment.
"""
diff --git a/Examples/varia/RoughnessModel.py b/Examples/varia/RoughnessModel.py
index 041a31d29e5..3950e975054 100644
--- a/Examples/varia/RoughnessModel.py
+++ b/Examples/varia/RoughnessModel.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Example of simulating a rough sample with a
tanh and Nevot-Croce roughness model using BornAgain.
diff --git a/Examples/varia/SimulationParameters.py b/Examples/varia/SimulationParameters.py
index a4fd150cae8..c3d2a400f04 100644
--- a/Examples/varia/SimulationParameters.py
+++ b/Examples/varia/SimulationParameters.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Working with sample parameters.
diff --git a/Examples/varia/SpecularSimulationWithRoughness.py b/Examples/varia/SpecularSimulationWithRoughness.py
index 0fd4821842c..72d9c59b602 100644
--- a/Examples/varia/SpecularSimulationWithRoughness.py
+++ b/Examples/varia/SpecularSimulationWithRoughness.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
"""
Example of simulating a reflectometry experiment
with a rough sample using BornAgain.
diff --git a/auto/Wrap/doxygenBase.i b/auto/Wrap/doxygenBase.i
index 5ae497b8532..6b53a9f9f13 100644
--- a/auto/Wrap/doxygenBase.i
+++ b/auto/Wrap/doxygenBase.i
@@ -767,7 +767,7 @@ Returns value of last on-axis point.
%feature("docstring") PointwiseAxis::binCenter "double PointwiseAxis::binCenter(size_t index) const override
-Returns the coordinate corresponding to the given index.
+Returns the coordinate corresponding to the given index. For this type of axis (\"pointwise\") this equals returning an explicitly defined coordinate.
";
%feature("docstring") PointwiseAxis::findClosestIndex "size_t PointwiseAxis::findClosestIndex(double value) const override
@@ -1436,6 +1436,9 @@ Returns string representing python stack trace.
";
+// File: namespacestd.xml
+
+
// File: namespaceStringUtils.xml
%feature("docstring") StringUtils::matchesPattern "bool StringUtils::matchesPattern(const std::string &text, const std::string &wildcardPattern)
diff --git a/auto/Wrap/doxygenFit.i b/auto/Wrap/doxygenFit.i
index a57314eb406..0bc683d4cf0 100644
--- a/auto/Wrap/doxygenFit.i
+++ b/auto/Wrap/doxygenFit.i
@@ -3344,9 +3344,13 @@ Copy constructor for functor based on ROOT::Math::IMultiGenFunction
";
%feature("docstring") ROOT::Math::Functor::Clone "ImplBase* ROOT::Math::Functor::Clone() const
+
+Clone a function. Each derived class must implement their version of the Clone method
";
%feature("docstring") ROOT::Math::Functor::NDim "unsigned int ROOT::Math::Functor::NDim() const
+
+Retrieve the dimension of the function
";
@@ -3596,6 +3600,71 @@ C++ includes: GenericFunction.h
";
+// File: classGeneticMinimizer.xml
+%feature("docstring") GeneticMinimizer "
+
+Wrapper for the CERN ROOT Genetic minimizer.
+
+C++ includes: GeneticMinimizer.h
+";
+
+%feature("docstring") GeneticMinimizer::GeneticMinimizer "GeneticMinimizer::GeneticMinimizer()
+";
+
+%feature("docstring") GeneticMinimizer::~GeneticMinimizer "GeneticMinimizer::~GeneticMinimizer()
+";
+
+%feature("docstring") GeneticMinimizer::setTolerance "void GeneticMinimizer::setTolerance(double value)
+
+Sets tolerance on the function value at the minimum. Minimization will stop when the estimated vertical distance to the minimum (EDM) is less than 0.001*tolerance*ErrorDef. Here ErrorDef=1.0 for chi squared fit and ErrorDef=0.5 for negative log likelihood fit.
+";
+
+%feature("docstring") GeneticMinimizer::tolerance "double GeneticMinimizer::tolerance() const
+";
+
+%feature("docstring") GeneticMinimizer::setPrintLevel "void GeneticMinimizer::setPrintLevel(int value)
+
+Sets minimizer internal print level.
+";
+
+%feature("docstring") GeneticMinimizer::printLevel "int GeneticMinimizer::printLevel() const
+";
+
+%feature("docstring") GeneticMinimizer::setMaxIterations "void GeneticMinimizer::setMaxIterations(int value)
+
+Sets maximum number of iterations to try at each step.
+";
+
+%feature("docstring") GeneticMinimizer::maxIterations "int GeneticMinimizer::maxIterations() const
+";
+
+%feature("docstring") GeneticMinimizer::setPopulationSize "void GeneticMinimizer::setPopulationSize(int value)
+
+Sets population size.
+";
+
+%feature("docstring") GeneticMinimizer::populationSize "int GeneticMinimizer::populationSize() const
+";
+
+%feature("docstring") GeneticMinimizer::setRandomSeed "void GeneticMinimizer::setRandomSeed(int value)
+
+Sets random seed.
+";
+
+%feature("docstring") GeneticMinimizer::randomSeed "int GeneticMinimizer::randomSeed() const
+";
+
+%feature("docstring") GeneticMinimizer::statusToString "std::string GeneticMinimizer::statusToString() const override
+
+Returns string representation of current minimizer status.
+";
+
+%feature("docstring") GeneticMinimizer::statusMap "std::map< std::string, std::string > GeneticMinimizer::statusMap() const override
+
+Returns map of string representing different minimizer statuses.
+";
+
+
// File: classROOT_1_1Math_1_1GeneticMinimizer.xml
%feature("docstring") ROOT::Math::GeneticMinimizer "
@@ -3710,71 +3779,6 @@ retrieve the minimizer options (implement derived class if needed)
";
-// File: classGeneticMinimizer.xml
-%feature("docstring") GeneticMinimizer "
-
-Wrapper for the CERN ROOT Genetic minimizer.
-
-C++ includes: GeneticMinimizer.h
-";
-
-%feature("docstring") GeneticMinimizer::GeneticMinimizer "GeneticMinimizer::GeneticMinimizer()
-";
-
-%feature("docstring") GeneticMinimizer::~GeneticMinimizer "GeneticMinimizer::~GeneticMinimizer()
-";
-
-%feature("docstring") GeneticMinimizer::setTolerance "void GeneticMinimizer::setTolerance(double value)
-
-Sets tolerance on the function value at the minimum. Minimization will stop when the estimated vertical distance to the minimum (EDM) is less than 0.001*tolerance*ErrorDef. Here ErrorDef=1.0 for chi squared fit and ErrorDef=0.5 for negative log likelihood fit.
-";
-
-%feature("docstring") GeneticMinimizer::tolerance "double GeneticMinimizer::tolerance() const
-";
-
-%feature("docstring") GeneticMinimizer::setPrintLevel "void GeneticMinimizer::setPrintLevel(int value)
-
-Sets minimizer internal print level.
-";
-
-%feature("docstring") GeneticMinimizer::printLevel "int GeneticMinimizer::printLevel() const
-";
-
-%feature("docstring") GeneticMinimizer::setMaxIterations "void GeneticMinimizer::setMaxIterations(int value)
-
-Sets maximum number of iterations to try at each step.
-";
-
-%feature("docstring") GeneticMinimizer::maxIterations "int GeneticMinimizer::maxIterations() const
-";
-
-%feature("docstring") GeneticMinimizer::setPopulationSize "void GeneticMinimizer::setPopulationSize(int value)
-
-Sets population size.
-";
-
-%feature("docstring") GeneticMinimizer::populationSize "int GeneticMinimizer::populationSize() const
-";
-
-%feature("docstring") GeneticMinimizer::setRandomSeed "void GeneticMinimizer::setRandomSeed(int value)
-
-Sets random seed.
-";
-
-%feature("docstring") GeneticMinimizer::randomSeed "int GeneticMinimizer::randomSeed() const
-";
-
-%feature("docstring") GeneticMinimizer::statusToString "std::string GeneticMinimizer::statusToString() const override
-
-Returns string representation of current minimizer status.
-";
-
-%feature("docstring") GeneticMinimizer::statusMap "std::map< std::string, std::string > GeneticMinimizer::statusMap() const override
-
-Returns map of string representing different minimizer statuses.
-";
-
-
// File: structROOT_1_1Math_1_1GeneticMinimizerParameters.xml
%feature("docstring") ROOT::Math::GeneticMinimizerParameters "";
@@ -8003,8 +8007,8 @@ This table describes the properties of the MIXMAX generators. MIXMAX is a genuin
$p=2^{61}-1$ is the Mersenne prime number.
The MIXMAX generators with these parameters pass all of the BigCrush
tests in the <a href=\"http://simul.iro.umontreal.ca/testu01/tu01.html\">TestU01 suite</a\\\\>.
-
-\\\\begin{table}[h]
+
+ \\\\begin{table}[h]
\\\\centering
\\\\begin{tabular}{@{} rrlcrr @{}}
@@ -8871,14 +8875,14 @@ ask for MinosError (Lower + Upper) can be printed via std::cout
";
-// File: classROOT_1_1Minuit2_1_1MinimumError_1_1MnNotPosDef.xml
-%feature("docstring") ROOT::Minuit2::MinimumError::MnNotPosDef "";
-
-
// File: classROOT_1_1Minuit2_1_1BasicMinimumError_1_1MnNotPosDef.xml
%feature("docstring") ROOT::Minuit2::BasicMinimumError::MnNotPosDef "";
+// File: classROOT_1_1Minuit2_1_1MinimumError_1_1MnNotPosDef.xml
+%feature("docstring") ROOT::Minuit2::MinimumError::MnNotPosDef "";
+
+
// File: classROOT_1_1Minuit2_1_1MnParabola.xml
%feature("docstring") ROOT::Minuit2::MnParabola "
@@ -12602,6 +12606,8 @@ Return the number of Parameters
";
%feature("docstring") ROOT::Math::WrappedParamFunctionGen::NDim "unsigned int ROOT::Math::WrappedParamFunctionGen< FuncPtr >::NDim() const
+
+Retrieve the dimension of the function
";
@@ -12703,6 +12709,9 @@ Returns horizontal line of 80 characters length with section name in it.
";
+// File: namespaceParentFunctor.xml
+
+
// File: namespaceROOT.xml
@@ -13219,6 +13228,9 @@ LAPACK Algebra function specialize the Outer_product function for LAVector;
";
+// File: namespacestd.xml
+
+
// File: namespaceTestFunctions.xml
%feature("docstring") TestFunctions::RosenBrock "double TestFunctions::RosenBrock(const std::vector< double > &par)
@@ -13241,6 +13253,9 @@ Decaying sinus from lmfit tutorial.
";
+// File: namespacetesting.xml
+
+
// File: namespaceTMath.xml
%feature("docstring") TMath::Abs "Short_t TMath::Abs(Short_t d)
";
@@ -15056,10 +15071,10 @@ Decaying sinus from lmfit tutorial.
// File: dir_ead683f11b26d141553bc0f1c348dc86.xml
-// File: dir_892d84e8d1420bf45a9053cf0eede900.xml
+// File: dir_05e24f99ab216f03e9d0cf366ad39939.xml
-// File: dir_05e24f99ab216f03e9d0cf366ad39939.xml
+// File: dir_892d84e8d1420bf45a9053cf0eede900.xml
// File: dir_ddbc8017d498762c6500a9e593e25277.xml
@@ -15071,10 +15086,10 @@ Decaying sinus from lmfit tutorial.
// File: dir_346bee264126587e5b77542d134e4add.xml
-// File: dir_5432497378cfbce702dc5799f292905b.xml
+// File: dir_7c95011753c2f8fb6f2a9c22c1fbdc50.xml
-// File: dir_7c95011753c2f8fb6f2a9c22c1fbdc50.xml
+// File: dir_5432497378cfbce702dc5799f292905b.xml
// File: dir_60772aca5f018fa4d428540699d2a67c.xml
diff --git a/auto/Wrap/doxygenSample.i b/auto/Wrap/doxygenSample.i
index a05b6b7c457..6e218ea906f 100644
--- a/auto/Wrap/doxygenSample.i
+++ b/auto/Wrap/doxygenSample.i
@@ -7867,7 +7867,7 @@ Complex form factor of rectangular ripple (bar).
%feature("docstring") ripples::profile_yz_cosine "complex_t ripples::profile_yz_cosine(complex_t qy, complex_t qz, double width, double height)
-Complex form factor of triangular ripple.
+Complex form factor of cosine ripple.
";
%feature("docstring") ripples::profile_yz_triangular "complex_t ripples::profile_yz_triangular(complex_t qy, complex_t qz, double width, double height, double asymmetry)
--
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