diff --git a/Core/PythonAPI/src/Beam.pypp.cpp b/Core/PythonAPI/src/Beam.pypp.cpp
index 7be8b71bcf08266592256d4ad8d71e74f8bb25fb..b9a6fb9a58eeaa7ec01aa8a6085af928a9683646 100644
--- a/Core/PythonAPI/src/Beam.pypp.cpp
+++ b/Core/PythonAPI/src/Beam.pypp.cpp
@@ -132,6 +132,26 @@ void register_Beam_class(){
Beam_exposer_t Beam_exposer = Beam_exposer_t( "Beam", bp::init< >() );
bp::scope Beam_scope( Beam_exposer );
Beam_exposer.def( bp::init< Beam const & >(( bp::arg("other") )) );
+ { //::Beam::SetSpinUpFraction
+
+ typedef void ( ::Beam::*SetSpinUpFraction_function_type )( double ) ;
+
+ Beam_exposer.def(
+ "SetSpinUpFraction"
+ , SetSpinUpFraction_function_type( &::Beam::SetSpinUpFraction )
+ , ( bp::arg("up_fraction") ) );
+
+ }
+ { //::Beam::checkPolarization
+
+ typedef bool ( ::Beam::*checkPolarization_function_type )( ::Eigen::Matrix2cd const & ) const;
+
+ Beam_exposer.def(
+ "checkPolarization"
+ , checkPolarization_function_type( &::Beam::checkPolarization )
+ , ( bp::arg("polarization") ) );
+
+ }
{ //::Beam::getCentralK
typedef ::cvector_t ( ::Beam::*getCentralK_function_type )( ) const;
@@ -149,6 +169,15 @@ void register_Beam_class(){
"getIntensity"
, getIntensity_function_type( &::Beam::getIntensity ) );
+ }
+ { //::Beam::getPolarization
+
+ typedef ::Eigen::Matrix2cd ( ::Beam::*getPolarization_function_type )( ) const;
+
+ Beam_exposer.def(
+ "getPolarization"
+ , getPolarization_function_type( &::Beam::getPolarization ) );
+
}
{ //::Beam::operator=
@@ -190,6 +219,16 @@ void register_Beam_class(){
, setIntensity_function_type( &::Beam::setIntensity )
, ( bp::arg("intensity") ) );
+ }
+ { //::Beam::setPolarization
+
+ typedef void ( ::Beam::*setPolarization_function_type )( ::Eigen::Matrix2cd const & ) ;
+
+ Beam_exposer.def(
+ "setPolarization"
+ , setPolarization_function_type( &::Beam::setPolarization )
+ , ( bp::arg("polarization") ) );
+
}
{ //::IParameterized::areParametersChanged
diff --git a/Core/PythonAPI/src/HomogeneousMaterial.pypp.cpp b/Core/PythonAPI/src/HomogeneousMaterial.pypp.cpp
index 1e01a3ee1dc5acd5c2d0130b75c8637a36fe04ae..ae553a961747045302f059a3be2debf95d937b64 100644
--- a/Core/PythonAPI/src/HomogeneousMaterial.pypp.cpp
+++ b/Core/PythonAPI/src/HomogeneousMaterial.pypp.cpp
@@ -14,14 +14,50 @@ GCC_DIAG_ON(missing-field-initializers);
namespace bp = boost::python;
+struct HomogeneousMaterial_wrapper : HomogeneousMaterial, bp::wrapper< HomogeneousMaterial > {
+
+ HomogeneousMaterial_wrapper(HomogeneousMaterial const & arg )
+ : HomogeneousMaterial( arg )
+ , bp::wrapper< HomogeneousMaterial >(){
+ // copy constructor
+
+ }
+
+ HomogeneousMaterial_wrapper(::std::string const & name, ::complex_t const & refractive_index )
+ : HomogeneousMaterial( name, boost::ref(refractive_index) )
+ , bp::wrapper< HomogeneousMaterial >(){
+ // constructor
+
+ }
+
+ HomogeneousMaterial_wrapper(::std::string const & name, double refractive_index_delta, double refractive_index_beta )
+ : HomogeneousMaterial( name, refractive_index_delta, refractive_index_beta )
+ , bp::wrapper< HomogeneousMaterial >(){
+ // constructor
+
+ }
+
+ virtual bool isScalarMaterial( ) {
+ if( bp::override func_isScalarMaterial = this->get_override( "isScalarMaterial" ) )
+ return func_isScalarMaterial( );
+ else{
+ return this->IMaterial::isScalarMaterial( );
+ }
+ }
+
+ bool default_isScalarMaterial( ) {
+ return IMaterial::isScalarMaterial( );
+ }
+
+};
+
void register_HomogeneousMaterial_class(){
{ //::HomogeneousMaterial
- typedef bp::class_< HomogeneousMaterial, bp::bases< IMaterial > > HomogeneousMaterial_exposer_t;
+ typedef bp::class_< HomogeneousMaterial_wrapper, bp::bases< IMaterial > > HomogeneousMaterial_exposer_t;
HomogeneousMaterial_exposer_t HomogeneousMaterial_exposer = HomogeneousMaterial_exposer_t( "HomogeneousMaterial", bp::init< std::string const &, complex_t const & >(( bp::arg("name"), bp::arg("refractive_index") )) );
bp::scope HomogeneousMaterial_scope( HomogeneousMaterial_exposer );
- HomogeneousMaterial_exposer.def( bp::init< std::string const &, double, double >(( bp::arg("name"), bp::arg("refractive_index_real"), bp::arg("refractive_index_imag") )) );
- HomogeneousMaterial_exposer.def( bp::init< complex_t const & >(( bp::arg("refractive_index") )) );
+ HomogeneousMaterial_exposer.def( bp::init< std::string const &, double, double >(( bp::arg("name"), bp::arg("refractive_index_delta"), bp::arg("refractive_index_beta") )) );
{ //::HomogeneousMaterial::getRefractiveIndex
typedef ::complex_t ( ::HomogeneousMaterial::*getRefractiveIndex_function_type )( ) const;
@@ -41,6 +77,17 @@ void register_HomogeneousMaterial_class(){
, ( bp::arg("refractive_index") ) );
}
+ { //::IMaterial::isScalarMaterial
+
+ typedef bool ( ::IMaterial::*isScalarMaterial_function_type )( ) ;
+ typedef bool ( HomogeneousMaterial_wrapper::*default_isScalarMaterial_function_type )( ) ;
+
+ HomogeneousMaterial_exposer.def(
+ "isScalarMaterial"
+ , isScalarMaterial_function_type(&::IMaterial::isScalarMaterial)
+ , default_isScalarMaterial_function_type(&HomogeneousMaterial_wrapper::default_isScalarMaterial) );
+
+ }
}
}
diff --git a/Core/PythonAPI/src/IMaterial.pypp.cpp b/Core/PythonAPI/src/IMaterial.pypp.cpp
index 1a1997a5f361c34b79ace156dcf0633d265f56e5..87c26478ab3396e132684a4eee76153ab501b54d 100644
--- a/Core/PythonAPI/src/IMaterial.pypp.cpp
+++ b/Core/PythonAPI/src/IMaterial.pypp.cpp
@@ -14,13 +14,53 @@ GCC_DIAG_ON(missing-field-initializers);
namespace bp = boost::python;
+struct IMaterial_wrapper : IMaterial, bp::wrapper< IMaterial > {
+
+ IMaterial_wrapper(IMaterial const & arg )
+ : IMaterial( arg )
+ , bp::wrapper< IMaterial >(){
+ // copy constructor
+
+ }
+
+ IMaterial_wrapper(::std::string const & name )
+ : IMaterial( name )
+ , bp::wrapper< IMaterial >(){
+ // constructor
+
+ }
+
+ virtual bool isScalarMaterial( ) {
+ if( bp::override func_isScalarMaterial = this->get_override( "isScalarMaterial" ) )
+ return func_isScalarMaterial( );
+ else{
+ return this->IMaterial::isScalarMaterial( );
+ }
+ }
+
+ bool default_isScalarMaterial( ) {
+ return IMaterial::isScalarMaterial( );
+ }
+
+};
+
void register_IMaterial_class(){
{ //::IMaterial
- typedef bp::class_< IMaterial > IMaterial_exposer_t;
+ typedef bp::class_< IMaterial_wrapper > IMaterial_exposer_t;
IMaterial_exposer_t IMaterial_exposer = IMaterial_exposer_t( "IMaterial", bp::init< std::string const & >(( bp::arg("name") )) );
bp::scope IMaterial_scope( IMaterial_exposer );
- IMaterial_exposer.def( bp::init< IMaterial const & >(( bp::arg("other") )) );
+ { //::IMaterial::isScalarMaterial
+
+ typedef bool ( ::IMaterial::*isScalarMaterial_function_type )( ) ;
+ typedef bool ( IMaterial_wrapper::*default_isScalarMaterial_function_type )( ) ;
+
+ IMaterial_exposer.def(
+ "isScalarMaterial"
+ , isScalarMaterial_function_type(&::IMaterial::isScalarMaterial)
+ , default_isScalarMaterial_function_type(&IMaterial_wrapper::default_isScalarMaterial) );
+
+ }
}
}
diff --git a/Core/PythonAPI/src/MaterialManager.pypp.cpp b/Core/PythonAPI/src/MaterialManager.pypp.cpp
index 6fb93d93363c6a54e802c520602625a27a789ed0..945dc8ba821332a0bda3b314684e4647c3369fd8 100644
--- a/Core/PythonAPI/src/MaterialManager.pypp.cpp
+++ b/Core/PythonAPI/src/MaterialManager.pypp.cpp
@@ -48,7 +48,7 @@ void register_MaterialManager_class(){
MaterialManager_exposer.def(
"getHomogeneousMaterial"
, getHomogeneousMaterial_function_type( &::MaterialManager::getHomogeneousMaterial )
- , ( bp::arg("name"), bp::arg("refractive_index_real"), bp::arg("refractive_index_imag") )
+ , ( bp::arg("name"), bp::arg("refractive_index_delta"), bp::arg("refractive_index_beta") )
, bp::return_value_policy< bp::reference_existing_object >() );
}
diff --git a/Core/PythonAPI/src/PythonInterface_global_variables.pypp.cpp b/Core/PythonAPI/src/PythonInterface_global_variables.pypp.cpp
index 5d1add1c3715c32e564ef88a0b5a13bcb4548e71..8342a29e6283f7a37e777d1f430278995ad33831 100644
--- a/Core/PythonAPI/src/PythonInterface_global_variables.pypp.cpp
+++ b/Core/PythonAPI/src/PythonInterface_global_variables.pypp.cpp
@@ -30,6 +30,8 @@ void register_global_variables(){
bp::scope().attr("degree") = Units::degree;
+ bp::scope().attr("gauss") = Units::gauss;
+
bp::scope().attr("meter") = Units::meter;
bp::scope().attr("micrometer") = Units::micrometer;
@@ -52,4 +54,6 @@ void register_global_variables(){
bp::scope().attr("steradian") = Units::steradian;
+ bp::scope().attr("tesla") = Units::tesla;
+
}
diff --git a/Core/Samples/inc/IMaterial.h b/Core/Samples/inc/IMaterial.h
index 883c734a2d67fddfec8a1330f8633f2f5f7f2439..88a1e84eb8379ce4f67967ef0202f35452aac90f 100644
--- a/Core/Samples/inc/IMaterial.h
+++ b/Core/Samples/inc/IMaterial.h
@@ -18,7 +18,6 @@
#include <string>
#include <iostream>
-//#include <typeinfo>
#include "INamed.h"
//! Interface to a named material.
@@ -29,9 +28,6 @@ class IMaterial : public INamed
//! Constructor that sets _name_.
explicit IMaterial(const std::string& name) : INamed(name) {}
- //! Copy constructor. TODO: test whether needed
- IMaterial(const IMaterial& other) : INamed(other) {}
-
//! Destructor.
virtual ~IMaterial() {}
@@ -46,7 +42,6 @@ class IMaterial : public INamed
protected:
virtual void print(std::ostream& ostr) const
{ ostr << "IMat:" << getName() << "<" << this << ">"; }
- // TODO: try ostr << typeid(*this).name() << " " << this;
};
#endif // IMATERIAL_H
diff --git a/Tests/FunctionalTests/TestPyCore/isgisaxs02.py b/Tests/FunctionalTests/TestPyCore/isgisaxs02.py
index a12939931ac9240131b4cd628912e871c1797d83..a6db44bb9e461f6de37dd7ef38adc22449b02c0e 100644
--- a/Tests/FunctionalTests/TestPyCore/isgisaxs02.py
+++ b/Tests/FunctionalTests/TestPyCore/isgisaxs02.py
@@ -19,7 +19,7 @@ def RunSimulation():
# defining materials
mAmbience = MaterialManager.getHomogeneousMaterial("Air", 0.0, 0.0 )
# collection of particles
- n_particle = complex(6e-4, 2e-8)
+ n_particle = complex(1.0 - 6e-4, 2e-8)
radius1 = 5.0*nanometer
radius2 = 10.0*nanometer
height1 = radius1
diff --git a/dev-tools/python-bindings/MakePyCore.py b/dev-tools/python-bindings/MakePyCore.py
index 29095b0af1a818e5abb8e759e1503363ec311098..a1f51c606f4d5d20e2a156e261e4120bbc611ce2 100644
--- a/dev-tools/python-bindings/MakePyCore.py
+++ b/dev-tools/python-bindings/MakePyCore.py
@@ -26,7 +26,8 @@ include_dirs = [
'../../Core/Algorithms/inc',
'../../Core/Tools/inc',
'../../Core/PythonAPI/inc',
- '../../Core/Geometry/inc'
+ '../../Core/Geometry/inc',
+ '../../ThirdParty/eigen3'
]
include_classes = [
@@ -250,7 +251,7 @@ def MakePythonAPI(OutputTempDir):
print "NOTE: If you update the source library code you need to manually delete the cache_core.xml file, or run 'python codegenerator.py clean'"
xml_cached_fc = parser.create_cached_source_fc( "PythonCoreList.h", "cache_core.xml" )
#xml_cached_fc = parser.create_cached_source_fc( ["PythonCoreList.h","PythonCoreExposer.h"], "cache_core.xml" )
- mb = module_builder.module_builder_t( [xml_cached_fc], include_paths=include_dirs, gccxml_path=mygccxml, cflags="-m64")
+ mb = module_builder.module_builder_t( [xml_cached_fc], include_paths=include_dirs, gccxml_path=mygccxml, cflags="-m64 -msse -msse2 -fno-strict-aliasing -msse3")
# -----------------
# general rules
diff --git a/dev-tools/python-bindings/MakePyFit.py b/dev-tools/python-bindings/MakePyFit.py
index 3329d9da21799d7fe830ec3f9cfc9ca08b4e4090..b765bb902530092b9364c286147ab747e85bada1 100644
--- a/dev-tools/python-bindings/MakePyFit.py
+++ b/dev-tools/python-bindings/MakePyFit.py
@@ -25,9 +25,9 @@ include_dirs = [
'../../Core/Algorithms/inc',
'../../Core/Tools/inc',
'../../Core/Geometry/inc',
-'../../Core/Fitting/inc',
'../../Fit/Factory/inc',
-'../../Fit/PythonAPI/inc'
+'../../Fit/PythonAPI/inc',
+'../../ThirdParty/eigen3',
]
include_classes = [
@@ -100,7 +100,7 @@ def MakePythonAPI(OutputTempDir):
#If the cache file cache_core.xml doesn't exist it gets created, otherwise it just gets loaded
print "NOTE: If you update the source library code you need to manually delete the cache_fit.xml file, or run 'python codegenerator.py clean'"
xml_cached_fc = parser.create_cached_source_fc( "PythonFitList.h", "cache_fit.xml" )
- mb = module_builder.module_builder_t( [xml_cached_fc], include_paths=include_dirs, gccxml_path=mygccxml, cflags="-m64")
+ mb = module_builder.module_builder_t( [xml_cached_fc], include_paths=include_dirs, gccxml_path=mygccxml, cflags="-m64 -msse3")
# -----------------
# general rules
diff --git a/shared.pri b/shared.pri
index 472e551b2d7390ac9e23d04bf2501e02a63563b9..4df3f5c229d319a65897d72c2b47aac4dc0670af 100644
--- a/shared.pri
+++ b/shared.pri
@@ -2,8 +2,7 @@
# Common settings for all BornAgain compilations
# -----------------------------------------------------------------------------
-#CONFIG += BORNAGAIN_PYTHON # provide python bindings compilation
-
+CONFIG += BORNAGAIN_PYTHON # provide python bindings compilation
win32 {
MAKE_COMMAND = mingw32-make