From 5a43311b9bdf74ebaeddf0f5a8e005518448bd2f Mon Sep 17 00:00:00 2001
From: "Joachim Wuttke (h)" <j.wuttke@fz-juelich.de>
Date: Thu, 19 Nov 2020 13:58:20 +0100
Subject: [PATCH] rename README -> README.md; uniform subdirectory name
Python/, not python/
---
Examples/{python/README => Python/README.md} | 0
Examples/{python => Python}/fitting/README.md | 0
.../ex01_BasicExamples/basic_fitting_tutorial.py | 0
.../basic_fitting_tutorial_data.txt.gz | Bin
.../ex01_BasicExamples/consecutive_fitting.py | 0
.../ex01_BasicExamples/minimal_fit_example.py | 0
.../ex01_BasicExamples/minimizer_settings.py | 0
.../ex02_AdvancedExamples/find_background.py | 0
.../ex02_AdvancedExamples/fit_along_slices.py | 0
.../fitting/ex02_AdvancedExamples/fit_with_masks.py | 0
.../ex02_AdvancedExamples/multiple_datasets.py | 0
.../custom_objective_function.py | 0
.../experiment_at_galaxi/fit_galaxi_data.py | 0
.../experiment_at_galaxi/galaxi_data.tif.gz | Bin
.../experiment_at_galaxi/sample_builder.py | 0
.../external_minimizer/lmfit_basics.py | 0
.../external_minimizer/lmfit_with_plotting.py | 0
.../specular/FitSpecularBasics.py | 0
.../specular/FitWithUncertainties.py | 0
.../specular/RealLifeReflectometryFitting.py | 0
.../specular/genx_interchanging_layers.dat.gz | Bin
.../specular/mg6a_Merged.txt.gz | Bin
.../ex01_BasicParticles/AllFormFactorsAvailable.py | 0
.../ex01_BasicParticles/CylindersAndPrisms.py | 0
.../simulation/ex01_BasicParticles/CylindersInBA.py | 0
.../ex01_BasicParticles/CylindersInDWBA.py | 0
.../CylindersWithSizeDistribution.py | 0
.../ex01_BasicParticles/RotatedPyramids.py | 0
.../TwoTypesOfCylindersWithSizeDistribution.py | 0
.../ex02_LayeredStructures/BuriedParticles.py | 0
.../ex02_LayeredStructures/CorrelatedRoughness.py | 0
.../ex03_InterferenceFunctions/ApproximationDA.py | 0
.../ex03_InterferenceFunctions/ApproximationLMA.py | 0
.../ex03_InterferenceFunctions/ApproximationSSCA.py | 0
.../CosineRipplesAtRectLattice.py | 0
.../Interference1DLattice.py | 0
.../Interference1DRadialParaCrystal.py | 0
.../Interference2DCenteredSquareLattice.py | 0
.../Interference2DLatticeSumOfRotated.py | 0
.../Interference2DParaCrystal.py | 0
.../Interference2DRotatedSquareLattice.py | 0
.../Interference2DSquareFiniteLattice.py | 0
.../Interference2DSquareLattice.py | 0
.../RectangularGrating.py | 0
.../SpheresAtHexLattice.py | 0
.../ex03_InterferenceFunctions/TriangularRipple.py | 0
.../ex04_ComplexShapes/BiMaterialCylinders.py | 0
.../ex04_ComplexShapes/CoreShellNanoparticles.py | 0
.../ex04_ComplexShapes/CustomFormFactor.py | 0
.../HexagonalLatticesWithBasis.py | 0
.../ex04_ComplexShapes/LargeParticlesFormFactor.py | 0
.../simulation/ex04_ComplexShapes/MesoCrystal.py | 0
.../ParticlesCrossingInterface.py | 0
.../ex05_BeamAndDetector/BeamDivergence.py | 0
.../ex05_BeamAndDetector/ConstantBackground.py | 0
.../DetectorResolutionFunction.py | 0
.../ex05_BeamAndDetector/OffSpecularSimulation.py | 0
.../ex05_BeamAndDetector/RectangularDetector.py | 0
.../ex05_BeamAndDetector/ResonatorOffSpecSetup.py | 0
.../BasicPolarizedReflectometry.py | 0
.../ex06_Reflectometry/BasicSpecularSimulation.py | 0
.../ex06_Reflectometry/BeamAngularDivergence.py | 0
.../ex06_Reflectometry/BeamFullDivergence.py | 0
.../ex06_Reflectometry/FootprintCorrection.py | 0
.../ex06_Reflectometry/MaterialProfile.py | 0
.../MaterialProfileWithParticles.py | 0
.../ex06_Reflectometry/PolarizedNoAnalyzer.py | 0
.../PolarizedNonperfectAnalyzerPolarizer.py | 0
.../ex06_Reflectometry/PolarizedSpinAsymmetry.py | 0
.../ex06_Reflectometry/PolarizedSpinAsymmetryFit.py | 0
.../ex06_Reflectometry/PolarizedSpinFlip.py | 0
.../simulation/ex06_Reflectometry/RoughnessModel.py | 0
.../SpecularSimulationWithRoughness.py | 0
.../ex06_Reflectometry/TOFRWithResolution.py | 0
.../ex06_Reflectometry/TimeOfFlightReflectometry.py | 0
.../genx_angular_divergence.dat.gz | Bin
.../AccessingSimulationResults.py | 0
.../ex07_Miscellaneous/AxesInDifferentUnits.py | 0
.../ex07_Miscellaneous/BoxesWithSpecularPeak.py | 0
.../ex07_Miscellaneous/CylindersInAverageLayer.py | 0
.../simulation/ex07_Miscellaneous/DepthProbe.py | 0
.../simulation/ex07_Miscellaneous/FindPeaks.py | 0
.../HalfSpheresInAverageTopLayer.py | 0
.../ex07_Miscellaneous/MagneticSpheres.py | 0
.../simulation/ex07_Miscellaneous/PolarizedSANS.py | 0
.../ex07_Miscellaneous/SimulationParameters.py | 0
Examples/{python => Python}/utils/__init__.py | 0
.../{python => Python}/utils/plot_intensity_data.py | 0
.../utils/plot_intensity_data_diff.py | 0
Examples/{python => Python}/utils/show2d.py | 0
Examples/{python => Python}/utils/show2d_root.py | 0
Examples/{README => README.md} | 0
.../cpp/CylindersAndPrisms/{README => README.md} | 0
Examples/cpp/{README => README.md} | 0
.../StandardSamples/SizeDistributionModelsBuilder.h | 6 +++---
.../Functional/Python/PyCore/{README => README.md} | 0
.../Python/PyEmbedded/{README => README.md} | 0
Tests/Functional/Python/PyFit/{README => README.md} | 0
Tests/Functional/{README => README.md} | 0
Tests/Performance/Python/{README => README.md} | 0
ThirdParty/Core/tspectrum/{README => README.md} | 0
Wrap/{python/README => Python/README.md} | 0
Wrap/{python => Python}/__init__.py.in | 0
Wrap/{python => Python}/bornagain_python_install.py | 0
Wrap/{python => Python}/plot_utils.py | 2 +-
auto/{README => README.md} | 0
auto/Wrap/doxygenSample.i | 6 +++---
cmake/BornAgain/Config.cmake | 4 ++--
cmake/BornAgain/Directories.cmake | 2 +-
cmake/BornAgain/NixInstall.cmake | 2 +-
cmake/BornAgain/PythonAPI.cmake | 4 ++--
devtools/{README => README.md} | 0
devtools/profiling/{README => README.md} | 0
113 files changed, 13 insertions(+), 13 deletions(-)
rename Examples/{python/README => Python/README.md} (100%)
rename Examples/{python => Python}/fitting/README.md (100%)
rename Examples/{python => Python}/fitting/ex01_BasicExamples/basic_fitting_tutorial.py (100%)
rename Examples/{python => Python}/fitting/ex01_BasicExamples/basic_fitting_tutorial_data.txt.gz (100%)
rename Examples/{python => Python}/fitting/ex01_BasicExamples/consecutive_fitting.py (100%)
rename Examples/{python => Python}/fitting/ex01_BasicExamples/minimal_fit_example.py (100%)
rename Examples/{python => Python}/fitting/ex01_BasicExamples/minimizer_settings.py (100%)
rename Examples/{python => Python}/fitting/ex02_AdvancedExamples/find_background.py (100%)
rename Examples/{python => Python}/fitting/ex02_AdvancedExamples/fit_along_slices.py (100%)
rename Examples/{python => Python}/fitting/ex02_AdvancedExamples/fit_with_masks.py (100%)
rename Examples/{python => Python}/fitting/ex02_AdvancedExamples/multiple_datasets.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/custom_objective_function/custom_objective_function.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/experiment_at_galaxi/fit_galaxi_data.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/experiment_at_galaxi/galaxi_data.tif.gz (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/experiment_at_galaxi/sample_builder.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_basics.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_with_plotting.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/specular/FitSpecularBasics.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/specular/FitWithUncertainties.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/specular/RealLifeReflectometryFitting.py (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/specular/genx_interchanging_layers.dat.gz (100%)
rename Examples/{python => Python}/fitting/ex03_ExtendedExamples/specular/mg6a_Merged.txt.gz (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/AllFormFactorsAvailable.py (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/CylindersAndPrisms.py (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/CylindersInBA.py (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/CylindersInDWBA.py (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/CylindersWithSizeDistribution.py (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/RotatedPyramids.py (100%)
rename Examples/{python => Python}/simulation/ex01_BasicParticles/TwoTypesOfCylindersWithSizeDistribution.py (100%)
rename Examples/{python => Python}/simulation/ex02_LayeredStructures/BuriedParticles.py (100%)
rename Examples/{python => Python}/simulation/ex02_LayeredStructures/CorrelatedRoughness.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/ApproximationDA.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/ApproximationLMA.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/ApproximationSSCA.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/CosineRipplesAtRectLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference1DLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference1DRadialParaCrystal.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference2DCenteredSquareLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference2DLatticeSumOfRotated.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference2DParaCrystal.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference2DRotatedSquareLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference2DSquareFiniteLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/Interference2DSquareLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/RectangularGrating.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/SpheresAtHexLattice.py (100%)
rename Examples/{python => Python}/simulation/ex03_InterferenceFunctions/TriangularRipple.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/BiMaterialCylinders.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/CoreShellNanoparticles.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/CustomFormFactor.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/HexagonalLatticesWithBasis.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/LargeParticlesFormFactor.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/MesoCrystal.py (100%)
rename Examples/{python => Python}/simulation/ex04_ComplexShapes/ParticlesCrossingInterface.py (100%)
rename Examples/{python => Python}/simulation/ex05_BeamAndDetector/BeamDivergence.py (100%)
rename Examples/{python => Python}/simulation/ex05_BeamAndDetector/ConstantBackground.py (100%)
rename Examples/{python => Python}/simulation/ex05_BeamAndDetector/DetectorResolutionFunction.py (100%)
rename Examples/{python => Python}/simulation/ex05_BeamAndDetector/OffSpecularSimulation.py (100%)
rename Examples/{python => Python}/simulation/ex05_BeamAndDetector/RectangularDetector.py (100%)
rename Examples/{python => Python}/simulation/ex05_BeamAndDetector/ResonatorOffSpecSetup.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/BasicPolarizedReflectometry.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/BasicSpecularSimulation.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/BeamAngularDivergence.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/BeamFullDivergence.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/FootprintCorrection.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/MaterialProfile.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/MaterialProfileWithParticles.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/PolarizedNoAnalyzer.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/PolarizedNonperfectAnalyzerPolarizer.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/PolarizedSpinAsymmetry.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/PolarizedSpinAsymmetryFit.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/PolarizedSpinFlip.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/RoughnessModel.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/SpecularSimulationWithRoughness.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/TOFRWithResolution.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/TimeOfFlightReflectometry.py (100%)
rename Examples/{python => Python}/simulation/ex06_Reflectometry/genx_angular_divergence.dat.gz (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/AccessingSimulationResults.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/AxesInDifferentUnits.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/BoxesWithSpecularPeak.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/CylindersInAverageLayer.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/DepthProbe.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/FindPeaks.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/HalfSpheresInAverageTopLayer.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/MagneticSpheres.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/PolarizedSANS.py (100%)
rename Examples/{python => Python}/simulation/ex07_Miscellaneous/SimulationParameters.py (100%)
rename Examples/{python => Python}/utils/__init__.py (100%)
rename Examples/{python => Python}/utils/plot_intensity_data.py (100%)
rename Examples/{python => Python}/utils/plot_intensity_data_diff.py (100%)
rename Examples/{python => Python}/utils/show2d.py (100%)
rename Examples/{python => Python}/utils/show2d_root.py (100%)
rename Examples/{README => README.md} (100%)
rename Examples/cpp/CylindersAndPrisms/{README => README.md} (100%)
rename Examples/cpp/{README => README.md} (100%)
rename Tests/Functional/Python/PyCore/{README => README.md} (100%)
rename Tests/Functional/Python/PyEmbedded/{README => README.md} (100%)
rename Tests/Functional/Python/PyFit/{README => README.md} (100%)
rename Tests/Functional/{README => README.md} (100%)
rename Tests/Performance/Python/{README => README.md} (100%)
rename ThirdParty/Core/tspectrum/{README => README.md} (100%)
rename Wrap/{python/README => Python/README.md} (100%)
rename Wrap/{python => Python}/__init__.py.in (100%)
rename Wrap/{python => Python}/bornagain_python_install.py (100%)
rename Wrap/{python => Python}/plot_utils.py (99%)
rename auto/{README => README.md} (100%)
rename devtools/{README => README.md} (100%)
rename devtools/profiling/{README => README.md} (100%)
diff --git a/Examples/python/README b/Examples/Python/README.md
similarity index 100%
rename from Examples/python/README
rename to Examples/Python/README.md
diff --git a/Examples/python/fitting/README.md b/Examples/Python/fitting/README.md
similarity index 100%
rename from Examples/python/fitting/README.md
rename to Examples/Python/fitting/README.md
diff --git a/Examples/python/fitting/ex01_BasicExamples/basic_fitting_tutorial.py b/Examples/Python/fitting/ex01_BasicExamples/basic_fitting_tutorial.py
similarity index 100%
rename from Examples/python/fitting/ex01_BasicExamples/basic_fitting_tutorial.py
rename to Examples/Python/fitting/ex01_BasicExamples/basic_fitting_tutorial.py
diff --git a/Examples/python/fitting/ex01_BasicExamples/basic_fitting_tutorial_data.txt.gz b/Examples/Python/fitting/ex01_BasicExamples/basic_fitting_tutorial_data.txt.gz
similarity index 100%
rename from Examples/python/fitting/ex01_BasicExamples/basic_fitting_tutorial_data.txt.gz
rename to Examples/Python/fitting/ex01_BasicExamples/basic_fitting_tutorial_data.txt.gz
diff --git a/Examples/python/fitting/ex01_BasicExamples/consecutive_fitting.py b/Examples/Python/fitting/ex01_BasicExamples/consecutive_fitting.py
similarity index 100%
rename from Examples/python/fitting/ex01_BasicExamples/consecutive_fitting.py
rename to Examples/Python/fitting/ex01_BasicExamples/consecutive_fitting.py
diff --git a/Examples/python/fitting/ex01_BasicExamples/minimal_fit_example.py b/Examples/Python/fitting/ex01_BasicExamples/minimal_fit_example.py
similarity index 100%
rename from Examples/python/fitting/ex01_BasicExamples/minimal_fit_example.py
rename to Examples/Python/fitting/ex01_BasicExamples/minimal_fit_example.py
diff --git a/Examples/python/fitting/ex01_BasicExamples/minimizer_settings.py b/Examples/Python/fitting/ex01_BasicExamples/minimizer_settings.py
similarity index 100%
rename from Examples/python/fitting/ex01_BasicExamples/minimizer_settings.py
rename to Examples/Python/fitting/ex01_BasicExamples/minimizer_settings.py
diff --git a/Examples/python/fitting/ex02_AdvancedExamples/find_background.py b/Examples/Python/fitting/ex02_AdvancedExamples/find_background.py
similarity index 100%
rename from Examples/python/fitting/ex02_AdvancedExamples/find_background.py
rename to Examples/Python/fitting/ex02_AdvancedExamples/find_background.py
diff --git a/Examples/python/fitting/ex02_AdvancedExamples/fit_along_slices.py b/Examples/Python/fitting/ex02_AdvancedExamples/fit_along_slices.py
similarity index 100%
rename from Examples/python/fitting/ex02_AdvancedExamples/fit_along_slices.py
rename to Examples/Python/fitting/ex02_AdvancedExamples/fit_along_slices.py
diff --git a/Examples/python/fitting/ex02_AdvancedExamples/fit_with_masks.py b/Examples/Python/fitting/ex02_AdvancedExamples/fit_with_masks.py
similarity index 100%
rename from Examples/python/fitting/ex02_AdvancedExamples/fit_with_masks.py
rename to Examples/Python/fitting/ex02_AdvancedExamples/fit_with_masks.py
diff --git a/Examples/python/fitting/ex02_AdvancedExamples/multiple_datasets.py b/Examples/Python/fitting/ex02_AdvancedExamples/multiple_datasets.py
similarity index 100%
rename from Examples/python/fitting/ex02_AdvancedExamples/multiple_datasets.py
rename to Examples/Python/fitting/ex02_AdvancedExamples/multiple_datasets.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/custom_objective_function/custom_objective_function.py b/Examples/Python/fitting/ex03_ExtendedExamples/custom_objective_function/custom_objective_function.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/custom_objective_function/custom_objective_function.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/custom_objective_function/custom_objective_function.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/fit_galaxi_data.py b/Examples/Python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/fit_galaxi_data.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/fit_galaxi_data.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/fit_galaxi_data.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/galaxi_data.tif.gz b/Examples/Python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/galaxi_data.tif.gz
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/galaxi_data.tif.gz
rename to Examples/Python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/galaxi_data.tif.gz
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/sample_builder.py b/Examples/Python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/sample_builder.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/sample_builder.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/experiment_at_galaxi/sample_builder.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_basics.py b/Examples/Python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_basics.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_basics.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_basics.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_with_plotting.py b/Examples/Python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_with_plotting.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_with_plotting.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/external_minimizer/lmfit_with_plotting.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/specular/FitSpecularBasics.py b/Examples/Python/fitting/ex03_ExtendedExamples/specular/FitSpecularBasics.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/specular/FitSpecularBasics.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/specular/FitSpecularBasics.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/specular/FitWithUncertainties.py b/Examples/Python/fitting/ex03_ExtendedExamples/specular/FitWithUncertainties.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/specular/FitWithUncertainties.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/specular/FitWithUncertainties.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/specular/RealLifeReflectometryFitting.py b/Examples/Python/fitting/ex03_ExtendedExamples/specular/RealLifeReflectometryFitting.py
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/specular/RealLifeReflectometryFitting.py
rename to Examples/Python/fitting/ex03_ExtendedExamples/specular/RealLifeReflectometryFitting.py
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/specular/genx_interchanging_layers.dat.gz b/Examples/Python/fitting/ex03_ExtendedExamples/specular/genx_interchanging_layers.dat.gz
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/specular/genx_interchanging_layers.dat.gz
rename to Examples/Python/fitting/ex03_ExtendedExamples/specular/genx_interchanging_layers.dat.gz
diff --git a/Examples/python/fitting/ex03_ExtendedExamples/specular/mg6a_Merged.txt.gz b/Examples/Python/fitting/ex03_ExtendedExamples/specular/mg6a_Merged.txt.gz
similarity index 100%
rename from Examples/python/fitting/ex03_ExtendedExamples/specular/mg6a_Merged.txt.gz
rename to Examples/Python/fitting/ex03_ExtendedExamples/specular/mg6a_Merged.txt.gz
diff --git a/Examples/python/simulation/ex01_BasicParticles/AllFormFactorsAvailable.py b/Examples/Python/simulation/ex01_BasicParticles/AllFormFactorsAvailable.py
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rename from Examples/python/simulation/ex01_BasicParticles/AllFormFactorsAvailable.py
rename to Examples/Python/simulation/ex01_BasicParticles/AllFormFactorsAvailable.py
diff --git a/Examples/python/simulation/ex01_BasicParticles/CylindersAndPrisms.py b/Examples/Python/simulation/ex01_BasicParticles/CylindersAndPrisms.py
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rename from Examples/python/simulation/ex01_BasicParticles/CylindersAndPrisms.py
rename to Examples/Python/simulation/ex01_BasicParticles/CylindersAndPrisms.py
diff --git a/Examples/python/simulation/ex01_BasicParticles/CylindersInBA.py b/Examples/Python/simulation/ex01_BasicParticles/CylindersInBA.py
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diff --git a/Sample/StandardSamples/SizeDistributionModelsBuilder.h b/Sample/StandardSamples/SizeDistributionModelsBuilder.h
index 7f6e455989f..ccf5098c1a0 100644
--- a/Sample/StandardSamples/SizeDistributionModelsBuilder.h
+++ b/Sample/StandardSamples/SizeDistributionModelsBuilder.h
@@ -18,7 +18,7 @@
#include "Sample/SampleBuilderEngine/ISampleBuilder.h"
//! Creates the sample demonstrating size distribution model in decoupling approximation.
-//! Equivalent of Examples/python/simulation/ex03_InterferenceFunctions/ApproximationDA.py
+//! Equivalent of Examples/Python/simulation/ex03_InterferenceFunctions/ApproximationDA.py
//! @ingroup standard_samples
class SizeDistributionDAModelBuilder : public ISampleBuilder
@@ -28,7 +28,7 @@ public:
};
//! Creates the sample demonstrating size distribution model in local monodisperse approximation.
-//! Equivalent of Examples/python/simulation/ex03_InterferenceFunctions/ApproximationLMA.py
+//! Equivalent of Examples/Python/simulation/ex03_InterferenceFunctions/ApproximationLMA.py
//! @ingroup standard_samples
class SizeDistributionLMAModelBuilder : public ISampleBuilder
@@ -38,7 +38,7 @@ public:
};
//! Creates the sample demonstrating size distribution model in size space coupling approximation.
-//! Equivalent of Examples/python/simulation/ex03_InterferenceFunctions/ApproximationSSCA.py
+//! Equivalent of Examples/Python/simulation/ex03_InterferenceFunctions/ApproximationSSCA.py
//! @ingroup standard_samples
class SizeDistributionSSCAModelBuilder : public ISampleBuilder
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rename from Tests/Functional/Python/PyEmbedded/README
rename to Tests/Functional/Python/PyEmbedded/README.md
diff --git a/Tests/Functional/Python/PyFit/README b/Tests/Functional/Python/PyFit/README.md
similarity index 100%
rename from Tests/Functional/Python/PyFit/README
rename to Tests/Functional/Python/PyFit/README.md
diff --git a/Tests/Functional/README b/Tests/Functional/README.md
similarity index 100%
rename from Tests/Functional/README
rename to Tests/Functional/README.md
diff --git a/Tests/Performance/Python/README b/Tests/Performance/Python/README.md
similarity index 100%
rename from Tests/Performance/Python/README
rename to Tests/Performance/Python/README.md
diff --git a/ThirdParty/Core/tspectrum/README b/ThirdParty/Core/tspectrum/README.md
similarity index 100%
rename from ThirdParty/Core/tspectrum/README
rename to ThirdParty/Core/tspectrum/README.md
diff --git a/Wrap/python/README b/Wrap/Python/README.md
similarity index 100%
rename from Wrap/python/README
rename to Wrap/Python/README.md
diff --git a/Wrap/python/__init__.py.in b/Wrap/Python/__init__.py.in
similarity index 100%
rename from Wrap/python/__init__.py.in
rename to Wrap/Python/__init__.py.in
diff --git a/Wrap/python/bornagain_python_install.py b/Wrap/Python/bornagain_python_install.py
similarity index 100%
rename from Wrap/python/bornagain_python_install.py
rename to Wrap/Python/bornagain_python_install.py
diff --git a/Wrap/python/plot_utils.py b/Wrap/Python/plot_utils.py
similarity index 99%
rename from Wrap/python/plot_utils.py
rename to Wrap/Python/plot_utils.py
index f0161beb393..f21d57b1c37 100644
--- a/Wrap/python/plot_utils.py
+++ b/Wrap/Python/plot_utils.py
@@ -2,7 +2,7 @@
'''
# BornAgain: simulate and fit scattering at grazing incidence
#
-# @file Wrap/python.plot_utils
+# @file Wrap/Python.plot_utils
# @brief Python extensions of the SWIG-generated Python module bornagain.
#
# @homepage http://apps.jcns.fz-juelich.de/BornAgain
diff --git a/auto/README b/auto/README.md
similarity index 100%
rename from auto/README
rename to auto/README.md
diff --git a/auto/Wrap/doxygenSample.i b/auto/Wrap/doxygenSample.i
index 1e129b4a8c4..a9dc98b810d 100644
--- a/auto/Wrap/doxygenSample.i
+++ b/auto/Wrap/doxygenSample.i
@@ -7073,7 +7073,7 @@ Sets the batch and thread information to be used.
// File: classSizeDistributionDAModelBuilder.xml
%feature("docstring") SizeDistributionDAModelBuilder "
-Creates the sample demonstrating size distribution model in decoupling approximation. Equivalent of Examples/python/simulation/ex03_InterferenceFunctions/ApproximationDA.py
+Creates the sample demonstrating size distribution model in decoupling approximation. Equivalent of Examples/Python/simulation/ex03_InterferenceFunctions/ApproximationDA.py
C++ includes: SizeDistributionModelsBuilder.h
";
@@ -7085,7 +7085,7 @@ C++ includes: SizeDistributionModelsBuilder.h
// File: classSizeDistributionLMAModelBuilder.xml
%feature("docstring") SizeDistributionLMAModelBuilder "
-Creates the sample demonstrating size distribution model in local monodisperse approximation. Equivalent of Examples/python/simulation/ex03_InterferenceFunctions/ApproximationLMA.py
+Creates the sample demonstrating size distribution model in local monodisperse approximation. Equivalent of Examples/Python/simulation/ex03_InterferenceFunctions/ApproximationLMA.py
C++ includes: SizeDistributionModelsBuilder.h
";
@@ -7097,7 +7097,7 @@ C++ includes: SizeDistributionModelsBuilder.h
// File: classSizeDistributionSSCAModelBuilder.xml
%feature("docstring") SizeDistributionSSCAModelBuilder "
-Creates the sample demonstrating size distribution model in size space coupling approximation. Equivalent of Examples/python/simulation/ex03_InterferenceFunctions/ApproximationSSCA.py
+Creates the sample demonstrating size distribution model in size space coupling approximation. Equivalent of Examples/Python/simulation/ex03_InterferenceFunctions/ApproximationSSCA.py
C++ includes: SizeDistributionModelsBuilder.h
";
diff --git a/cmake/BornAgain/Config.cmake b/cmake/BornAgain/Config.cmake
index bd48224c063..36a0e80f044 100644
--- a/cmake/BornAgain/Config.cmake
+++ b/cmake/BornAgain/Config.cmake
@@ -23,9 +23,9 @@ configure_file(${CONFIGURABLES_DIR}/BABuild.h.in ${BUILD_INC_DIR}/BABuild.h @ON
configure_file(${CONFIGURABLES_DIR}/BATesting.h.in ${BUILD_INC_DIR}/BATesting.h @ONLY)
string(APPEND CMAKE_CXX_FLAGS " -I${BUILD_INC_DIR}")
-configure_file(${CMAKE_SOURCE_DIR}/Examples/python/utils/plot_intensity_data.py
+configure_file(${CMAKE_SOURCE_DIR}/Examples/Python/utils/plot_intensity_data.py
${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/plot_intensity_data.py COPYONLY)
-configure_file(${CMAKE_SOURCE_DIR}/Examples/python/utils/plot_intensity_data_diff.py
+configure_file(${CMAKE_SOURCE_DIR}/Examples/Python/utils/plot_intensity_data_diff.py
${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/plot_intensity_data_diff.py COPYONLY)
# -----------------------------------------------------------------------------
diff --git a/cmake/BornAgain/Directories.cmake b/cmake/BornAgain/Directories.cmake
index 064e6ec569f..330836505a5 100644
--- a/cmake/BornAgain/Directories.cmake
+++ b/cmake/BornAgain/Directories.cmake
@@ -4,7 +4,7 @@
set(WRAP_DIR ${CMAKE_SOURCE_DIR}/Wrap)
set(TEST_REFERENCE_DIR ${CMAKE_SOURCE_DIR}/Tests/ReferenceData)
-set(PY_EXAMPLES_DIR ${CMAKE_SOURCE_DIR}/Examples/python)
+set(PY_EXAMPLES_DIR ${CMAKE_SOURCE_DIR}/Examples/Python)
# -----------------------------------------------------------------------------
# auto directories (refreshed when CONFIGURE options are set)
diff --git a/cmake/BornAgain/NixInstall.cmake b/cmake/BornAgain/NixInstall.cmake
index 6c7bdfbb515..56f8402578d 100644
--- a/cmake/BornAgain/NixInstall.cmake
+++ b/cmake/BornAgain/NixInstall.cmake
@@ -29,6 +29,6 @@ if(NOT BORNAGAIN_APPLE_BUNDLE AND NOT BUILD_DEBIAN)
" COMPONENT Runtime)
else()
- install(FILES ${WRAP_DIR}/python/bornagain_python_install.py
+ install(FILES ${WRAP_DIR}/Python/bornagain_python_install.py
DESTINATION ${destination_libexec})
endif()
diff --git a/cmake/BornAgain/PythonAPI.cmake b/cmake/BornAgain/PythonAPI.cmake
index 1262f810d6d..1d73ad5299c 100644
--- a/cmake/BornAgain/PythonAPI.cmake
+++ b/cmake/BornAgain/PythonAPI.cmake
@@ -4,7 +4,7 @@ if(NOT BORNAGAIN_PYTHON)
message(FATAL_ERROR "PythonAPI included though BORNAGAIN_PYTHON=false")
endif()
-configure_file(${WRAP_DIR}/python/plot_utils.py
+configure_file(${WRAP_DIR}/Python/plot_utils.py
${CMAKE_BINARY_DIR}/lib/bornagain/plot_utils.py COPYONLY)
if(WIN32)
@@ -16,7 +16,7 @@ if(BORNAGAIN_APPLE_BUNDLE)
set(BA_MODULES_IMPORT_PATH
lib/BornAgain-${BornAgain_VERSION_MAJOR}.${BornAgain_VERSION_MINOR})
endif()
-configure_file("${WRAP_DIR}/python/__init__.py.in"
+configure_file("${WRAP_DIR}/Python/__init__.py.in"
"${CMAKE_BINARY_DIR}/lib/bornagain/__init__.py" @ONLY)
if(CONFIGURE_BINDINGS)
diff --git a/devtools/README b/devtools/README.md
similarity index 100%
rename from devtools/README
rename to devtools/README.md
diff --git a/devtools/profiling/README b/devtools/profiling/README.md
similarity index 100%
rename from devtools/profiling/README
rename to devtools/profiling/README.md
--
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