From 33a772c7b771c58c49536e4f870eeb5cb8804295 Mon Sep 17 00:00:00 2001
From: Marina Ganeva <m.ganeva@fz-juelich.de>
Date: Tue, 3 Dec 2013 16:04:55 +0100
Subject: [PATCH] IsGISAXS15 functional test is done, seems to be the last
one..
---
Core/StandardSamples/IsGISAXS15Builder.cpp | 54 +++++++++++++
Core/StandardSamples/IsGISAXS15Builder.h | 15 ++++
Core/StandardSamples/SampleBuilderFactory.cpp | 6 ++
Core/StandardSamples/SimulationRegistry.cpp | 5 ++
Core/StandardSamples/StandardSimulations.cpp | 20 +++++
Core/StandardSamples/StandardSimulations.h | 2 +-
.../TestCore/IsGISAXS15/IsGISAXS15.cpp | 79 +++++--------------
.../TestCore/IsGISAXS15/IsGISAXS15.h | 9 ++-
8 files changed, 125 insertions(+), 65 deletions(-)
create mode 100644 Core/StandardSamples/IsGISAXS15Builder.cpp
create mode 100644 Core/StandardSamples/IsGISAXS15Builder.h
diff --git a/Core/StandardSamples/IsGISAXS15Builder.cpp b/Core/StandardSamples/IsGISAXS15Builder.cpp
new file mode 100644
index 00000000000..1773b4acb14
--- /dev/null
+++ b/Core/StandardSamples/IsGISAXS15Builder.cpp
@@ -0,0 +1,54 @@
+#include "IsGISAXS15Builder.h"
+#include "MultiLayer.h"
+#include "ParticleDecoration.h"
+#include "MaterialManager.h"
+#include "Units.h"
+#include "InterferenceFunction1DParaCrystal.h"
+#include "FormFactorCylinder.h"
+#include "StochasticGaussian.h"
+#include "StochasticSampledParameter.h"
+#include "ParticleBuilder.h"
+
+
+IsGISAXS15Builder::IsGISAXS15Builder()
+{
+}
+
+ISample *IsGISAXS15Builder::buildSample() const
+{
+ MultiLayer *multi_layer = new MultiLayer();
+
+ complex_t n_particle(1.0-6e-4, 2e-8);
+ const IMaterial *p_air_material =
+ MaterialManager::getHomogeneousMaterial("Air", 0.0, 0.0);
+ const IMaterial *particle_material =
+ MaterialManager::getHomogeneousMaterial("Particle", n_particle);
+
+ Layer air_layer;
+ air_layer.setMaterial(p_air_material);
+ InterferenceFunction1DParaCrystal *p_interference_function =
+ new InterferenceFunction1DParaCrystal(15.0*Units::nanometer,
+ 5*Units::nanometer, 1e3*Units::nanometer);
+ p_interference_function->setKappa(4.02698);
+ ParticleDecoration particle_decoration;
+ Particle particle_prototype(particle_material, new FormFactorCylinder(
+ 5.0*Units::nanometer, 5.0*Units::nanometer));
+ StochasticDoubleGaussian sg(5.0*Units::nanometer, 1.25*Units::nanometer);
+ StochasticSampledParameter stochastic_radius(sg,30, 2);
+ ParticleBuilder particle_builder;
+ particle_builder.setPrototype(particle_prototype,
+ "/Particle/FormFactorCylinder/radius", stochastic_radius);
+ particle_builder.plantParticles(particle_decoration);
+
+ // Set height of each particle to its radius (H/R fixed)
+ ParameterPool *p_parameters = particle_decoration.createParameterTree();
+ p_parameters->fixRatioBetweenParameters("height", "radius", 1.0);
+
+ particle_decoration.addInterferenceFunction(p_interference_function);
+
+ air_layer.setDecoration(particle_decoration);
+
+ multi_layer->addLayer(air_layer);
+ return multi_layer;
+}
+
diff --git a/Core/StandardSamples/IsGISAXS15Builder.h b/Core/StandardSamples/IsGISAXS15Builder.h
new file mode 100644
index 00000000000..624632229ab
--- /dev/null
+++ b/Core/StandardSamples/IsGISAXS15Builder.h
@@ -0,0 +1,15 @@
+#ifndef ISGISAXS15BUILDER_H
+#define ISGISAXS15BUILDER_H
+
+#include "ISampleBuilder.h"
+
+//! The IsGISAXS15Builder class to build sample: size spacing correlation approximation
+//! (IsGISAXS example #15)
+class IsGISAXS15Builder : public ISampleBuilder
+{
+public:
+ IsGISAXS15Builder();
+ ISample *buildSample() const;
+};
+
+#endif // ISGISAXS15BUILDER_H
diff --git a/Core/StandardSamples/SampleBuilderFactory.cpp b/Core/StandardSamples/SampleBuilderFactory.cpp
index 755a34e81d2..f8c6136d107 100644
--- a/Core/StandardSamples/SampleBuilderFactory.cpp
+++ b/Core/StandardSamples/SampleBuilderFactory.cpp
@@ -9,6 +9,7 @@
#include "IsGISAXS09Builder.h"
#include "IsGISAXS10Builder.h"
#include "IsGISAXS11Builder.h"
+#include "IsGISAXS15Builder.h"
#include "MesoCrystal01Builder.h"
#include "PolarizedDWBAZeroMagBuilder.h"
@@ -99,6 +100,11 @@ SampleBuilderFactory::SampleBuilderFactory()
IFactoryCreateFunction<IsGISAXS11Builder, ISampleBuilder>,
"Core shell nanoparticles");
+ registerItem(
+ "isgisaxs15",
+ IFactoryCreateFunction<IsGISAXS15Builder, ISampleBuilder>,
+ "Size spacing correlation approximation");
+
registerItem(
"mesocrystal01",
IFactoryCreateFunction<MesoCrystal01Builder, ISampleBuilder>,
diff --git a/Core/StandardSamples/SimulationRegistry.cpp b/Core/StandardSamples/SimulationRegistry.cpp
index e37e5ea51f0..1a65d835831 100644
--- a/Core/StandardSamples/SimulationRegistry.cpp
+++ b/Core/StandardSamples/SimulationRegistry.cpp
@@ -76,6 +76,11 @@ SimulationRegistry::SimulationRegistry()
"isgisaxs11", StandardSimulations::IsGISAXS11,
"IsGISAXS11 example, Core shell nanoparticles");
+ registerItem(
+ "isgisaxs15", StandardSimulations::IsGISAXS15,
+ "IsGISAXS15 example, Size spacing correlation approximation");
+
+
registerItem(
"mesocrystal01", StandardSimulations::MesoCrystal01,
"mesocrystals of cylindrical shape composed by spherical nanoparticles");
diff --git a/Core/StandardSamples/StandardSimulations.cpp b/Core/StandardSamples/StandardSimulations.cpp
index ffd5a24a17a..6a43d54f6dd 100644
--- a/Core/StandardSamples/StandardSimulations.cpp
+++ b/Core/StandardSamples/StandardSimulations.cpp
@@ -340,6 +340,26 @@ Simulation *StandardSimulations::IsGISAXS11()
return result;
}
+Simulation *StandardSimulations::IsGISAXS15()
+{
+ SampleBuilderFactory factory;
+ ISampleBuilder *builder = factory.createBuilder("isgisaxs15");
+
+ Simulation *result = new Simulation();
+
+ result->setDetectorParameters(150, 0.05*Units::degree, 1.5*Units::degree,
+ 150, 0.05*Units::degree, 1.5*Units::degree, true);
+ result->setBeamParameters(1.0*Units::angstrom, 0.2*Units::degree,
+ 0.0*Units::degree);
+ SimulationParameters sim_params;
+ sim_params.me_if_approx = SimulationParameters::SSCA;
+ result->setSimulationParameters(sim_params);
+
+ result->setSampleBuilder( builder );
+
+ return result;
+}
+
Simulation *StandardSimulations::MesoCrystal01()
{
SampleBuilderFactory factory;
diff --git a/Core/StandardSamples/StandardSimulations.h b/Core/StandardSamples/StandardSimulations.h
index 7bb7a6df525..74dcbc02ca7 100644
--- a/Core/StandardSamples/StandardSimulations.h
+++ b/Core/StandardSamples/StandardSimulations.h
@@ -26,7 +26,7 @@ Simulation *IsGISAXS09();
Simulation *IsGISAXS09R();
Simulation *IsGISAXS10();
Simulation *IsGISAXS11();
-//Simulation *IsGISAXS15();
+Simulation *IsGISAXS15();
Simulation *MesoCrystal01();
Simulation *PolarizedDWBAZeroMag();
diff --git a/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.cpp b/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.cpp
index c8fb28c6ebe..84fbc01a416 100644
--- a/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.cpp
+++ b/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.cpp
@@ -12,7 +12,7 @@
#include "OutputDataIOFactory.h"
#include "Utils.h"
#include "MathFunctions.h"
-
+#include "SimulationRegistry.h"
#include <iostream>
#include <cmath>
@@ -21,74 +21,33 @@ FunctionalTests::IsGISAXS15::IsGISAXS15()
: m_name("IsGISAXS15")
, m_description("Size spacing correlation approximation")
, m_result(0)
+ , m_reference(0)
{ }
-void FunctionalTests::IsGISAXS15::run()
+void FunctionalTests::IsGISAXS15::run(const std::string &path_to_data)
{
- // building sample
- MultiLayer multi_layer;
- complex_t n_particle(1.0-6e-4, 2e-8);
- const IMaterial *p_air_material =
- MaterialManager::getHomogeneousMaterial("Air", 0.0, 0.0);
- const IMaterial *particle_material =
- MaterialManager::getHomogeneousMaterial("Particle", n_particle);
-
- Layer air_layer;
- air_layer.setMaterial(p_air_material);
- InterferenceFunction1DParaCrystal *p_interference_function =
- new InterferenceFunction1DParaCrystal(15.0*Units::nanometer,
- 5*Units::nanometer, 1e3*Units::nanometer);
- p_interference_function->setKappa(4.02698);
- ParticleDecoration particle_decoration;
- Particle particle_prototype(particle_material, new FormFactorCylinder(
- 5.0*Units::nanometer, 5.0*Units::nanometer));
- StochasticDoubleGaussian sg(5.0*Units::nanometer, 1.25*Units::nanometer);
- StochasticSampledParameter stochastic_radius(sg,30, 2);
- ParticleBuilder particle_builder;
- particle_builder.setPrototype(particle_prototype,
- "/Particle/FormFactorCylinder/radius", stochastic_radius);
- particle_builder.plantParticles(particle_decoration);
-
- // Set height of each particle to its radius (H/R fixed)
- ParameterPool *p_parameters = particle_decoration.createParameterTree();
- p_parameters->fixRatioBetweenParameters("height", "radius", 1.0);
-
- particle_decoration.addInterferenceFunction(p_interference_function);
-
- air_layer.setDecoration(particle_decoration);
-
- multi_layer.addLayer(air_layer);
-
- // building simulation
- Simulation simulation;
- simulation.setDetectorParameters(150, 0.05*Units::degree, 1.5*Units::degree,
- 150, 0.05*Units::degree, 1.5*Units::degree, true);
- simulation.setBeamParameters(1.0*Units::angstrom, 0.2*Units::degree,
- 0.0*Units::degree);
- SimulationParameters sim_params;
- sim_params.me_if_approx = SimulationParameters::SSCA;
- simulation.setSimulationParameters(sim_params);
- simulation.setSample(multi_layer);
-
- // running simulation and copying the data
- simulation.runSimulation();
- m_result = simulation.getIntensityData();
+ SimulationRegistry sim_registry;
+ Simulation *simulation = sim_registry.createSimulation("isgisaxs15");
+
+ // loading reference data
+ std::string filename = path_to_data + "isgisaxs15_reference.ima.gz";
+ m_reference = OutputDataIOFactory::readIntensityData(filename);
+
+ simulation->runSimulation();
+
+ m_result = simulation->getIntensityData();
+ delete simulation;
}
-int FunctionalTests::IsGISAXS15::analyseResults(const std::string &path_to_data)
+int FunctionalTests::IsGISAXS15::analyseResults()
{
const double threshold(2e-10);
- // retrieving reference data
- std::string filename = path_to_data + "isgisaxs15_reference.ima.gz";
- OutputData<double > *reference = OutputDataIOFactory::readIntensityData(filename);
-
// calculating average relative difference
- *m_result -= *reference;
- *m_result /= *reference;
- delete reference;
+ *m_result -= *m_reference;
+ *m_result /= *m_reference;
double diff(0);
for(OutputData<double>::const_iterator it=m_result->begin();
@@ -116,8 +75,8 @@ std::string GetPathToData(int argc, char **argv)
int main(int argc, char **argv)
{
FunctionalTests::IsGISAXS15 test;
- test.run();
- return test.analyseResults(GetPathToData(argc, argv));
+ test.run(GetPathToData(argc, argv));
+ return test.analyseResults();
}
#endif
diff --git a/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.h b/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.h
index 5863eacc86c..a91e1104ce0 100644
--- a/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.h
+++ b/Tests/FunctionalTests/TestCore/IsGISAXS15/IsGISAXS15.h
@@ -1,7 +1,7 @@
#ifndef FUNCTIONALTESTS_ISGISAXS15_H
#define FUNCTIONALTESTS_ISGISAXS15_H
-
+#include "ISampleBuilder.h"
#include <string>
#include "OutputData.h"
@@ -12,10 +12,10 @@ class IsGISAXS15
{
public :
IsGISAXS15();
- ~IsGISAXS15() { delete m_result; }
+ ~IsGISAXS15() { delete m_result; delete m_reference; }
- void run();
- int analyseResults(const std::string &path_to_data = std::string());
+ void run(const std::string &path_to_data = std::string());
+ int analyseResults();
const OutputData<double> *getOutputData() { return m_result; }
@@ -23,6 +23,7 @@ public :
std::string m_name;
std::string m_description;
OutputData<double> *m_result;
+ OutputData<double> *m_reference;
};
}
--
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