diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e82a655c2a957988617145e6f874efacfdb0d126 --- /dev/null +++ b/README.md @@ -0,0 +1,13 @@ +# ATLaS UI - Interactive user interface for the Automatic Tissue Labeling System (ATLaS) + +This repository contains the code of a prototype interactive user interface for ATLaS. +[ATLaS (Automatic Tissue Labeling System)](http://ime263.ime.kfa-juelich.de/gitlab/ch-schiffer/atlas) is a framework for training of deep neural networks for automatic cytoarchitectonic area segmentation. + +## Setup + +Currently, atlasui is not yet dockerized and just runs using a system wide installation of Apache. +The following services are required for the different components: + +- `httpd` daemon running the webservice. The configuration for this can be found at [`config/httpd`](config/httpd). By default, this has to be stored at `/etc/httpd/conf`. The WSGI module is required to run flask services within the Apache webserver. +- `mongodb` hosting a MongoDB for `atlas_server`. +- `mariadb` (former `MySQL database`) to store data for Microdraw. The database can be created using the script located at [scripts/create_database.sql](scripts/create_database.sql). \ No newline at end of file