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+# ATLaS UI - Interactive user interface for the Automatic Tissue Labeling System (ATLaS)
+
+This repository contains the code of a prototype interactive user interface for ATLaS.
+[ATLaS (Automatic Tissue Labeling System)](http://ime263.ime.kfa-juelich.de/gitlab/ch-schiffer/atlas) is a framework for training of deep neural networks for automatic cytoarchitectonic area segmentation.
+
+## Setup
+
+Currently, atlasui is not yet dockerized and just runs using a system wide installation of Apache.
+The following services are required for the different components:
+
+- `httpd` daemon running the webservice. The configuration for this can be found at [`config/httpd`](config/httpd). By default, this has to be stored at `/etc/httpd/conf`. The WSGI module is required to run flask services within the Apache webserver.
+- `mongodb` hosting a MongoDB for `atlas_server`.
+- `mariadb` (former `MySQL database`) to store data for Microdraw. The database can be created using the script located at [scripts/create_database.sql](scripts/create_database.sql).
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