From 2903d4d17fbc2e6c2bfb5496398c1f7d30c245f3 Mon Sep 17 00:00:00 2001
From: Christian Schiffer <c.schiffer@fz-juelich.de>
Date: Tue, 29 Nov 2022 14:41:54 +0100
Subject: [PATCH] Changed atlas to galaxy
---
atlas_server/src/static/training/predict.job.sh | 7 ++-----
atlas_server/src/static/training/train.job.sh | 7 ++-----
2 files changed, 4 insertions(+), 10 deletions(-)
diff --git a/atlas_server/src/static/training/predict.job.sh b/atlas_server/src/static/training/predict.job.sh
index b2d890a..54ca931 100644
--- a/atlas_server/src/static/training/predict.job.sh
+++ b/atlas_server/src/static/training/predict.job.sh
@@ -5,13 +5,10 @@ module purge
export SOFTWARE_STAGE=2022
export OTHERSTAGES=/p/software/jurecadc/otherstages
-export SOFTWARE_DIR=/p/project/cjinm16/schiffer1/software
-export SOFTWARE_STAGES_DIR=${SOFTWARE_DIR}/stages/
-export SOFTWARE_STAGE_DIR=${SOFTWARE_STAGES_DIR}/${SOFTWARE_STAGE}
-export SOFTWARE_STAGE_MODULES=${SOFTWARE_STAGE_DIR}/modules/
+source ${HOME}/galaxy/init.sh
export ATLAS_MODULE=atlas
-module use $OTHERSTAGES &> /dev/null
+module use ${OTHERSTAGES} &> /dev/null
module use ${SOFTWARE_STAGE_MODULES} &> /dev/null
module load ${ATLAS_MODULE}
diff --git a/atlas_server/src/static/training/train.job.sh b/atlas_server/src/static/training/train.job.sh
index 5a504da..146f415 100644
--- a/atlas_server/src/static/training/train.job.sh
+++ b/atlas_server/src/static/training/train.job.sh
@@ -5,13 +5,10 @@ module purge
export SOFTWARE_STAGE=2022
export OTHERSTAGES=/p/software/jurecadc/otherstages
-export SOFTWARE_DIR=/p/project/cjinm16/schiffer1/software
-export SOFTWARE_STAGES_DIR=${SOFTWARE_DIR}/stages/
-export SOFTWARE_STAGE_DIR=${SOFTWARE_STAGES_DIR}/${SOFTWARE_STAGE}
-export SOFTWARE_STAGE_MODULES=${SOFTWARE_STAGE_DIR}/modules/
+source ${HOME}/galaxy/init.sh
export ATLAS_MODULE=atlas
-module use $OTHERSTAGES &> /dev/null
+module use ${OTHERSTAGES} &> /dev/null
module use ${SOFTWARE_STAGE_MODULES} &> /dev/null
module load ${ATLAS_MODULE}
--
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